CRISPRone

CRISPRone report for GCA_007001925.1_ASM700192v1

♦ Seq 1: SEQG01000113.1 Clostridioides difficile strain LC3P-135-3 NODE_113_length_7502_cov_11.958, whole genome shotgun sequence

⇒Summary: seq-len = 7502 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98-1421 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 98-459 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98-459 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1062-1421 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 1062-1421 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98-459 bp]: array | spacers
           [Locus range 1062-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQG01000013.1 Clostridioides difficile strain LC3P-135-3 NODE_13_length_80453_cov_8.17677, whole genome shotgun sequence

⇒Summary: seq-len = 80453 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55584-63000 bp Zoom in on locus 1 x19 CRISPR array Location: 55584-56797 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 55584-56797 bp Num of repeats: 19 Spacers: s1-s18 Gene: COG1203:cas3 Type: Type-I Location: 57364-59346 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 59357-60427 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 60448-61596 bp Gene: pfam01881:cas6 Type: other Location: 61598-62362 bp Gene: cd09693:cas5 Type: Type-I Location: 62353-63000 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55584-56797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQG01000069.1 Clostridioides difficile strain LC3P-135-3 NODE_69_length_18739_cov_7.42064, whole genome shotgun sequence

⇒Summary: seq-len = 18739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 366-989 bp Zoom in on locus 1 x10 CRISPR array Location: 366-989 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 366-989 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 366-989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQG01000004.1 Clostridioides difficile strain LC3P-135-3 NODE_4_length_115478_cov_8.20654, whole genome shotgun sequence

⇒Summary: seq-len = 115478 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48177-56042 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 48177-49286 bp Gene: pfam01881:cas6 Type: other Location: 49544-50281 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 50286-51761 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 51781-52794 bp Gene: cd09693:cas5 Type: Type-I Location: 52810-53607 bp Gene: cd09641:cas3HD Type: Type-I Location: 53634-56042 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQG01000039.1 Clostridioides difficile strain LC3P-135-3 NODE_39_length_37572_cov_14.4214, whole genome shotgun sequence

⇒Summary: seq-len = 37572 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7679-10310 bp Zoom in on locus 1 Gene: mkCas0068:csf1gr8 Type: Subtype-IV-A Location: 7679-8407 bp Gene: unk Type: unknown Location: 8410-8802 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 8792-9619 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 9639-10310 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQG01000108.1 Clostridioides difficile strain LC3P-135-3 NODE_108_length_8141_cov_4.56289, whole genome shotgun sequence

⇒Summary: seq-len = 8141 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3184-4196 bp Zoom in on locus 1 x16 CRISPR array Location: 3184-4196 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3184-4196 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3184-4196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQG01000033.1 Clostridioides difficile strain LC3P-135-3 NODE_33_length_42937_cov_10.0295, whole genome shotgun sequence

⇒Summary: seq-len = 42937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17736-17830 bp Zoom in on locus 1 x2 CRISPR array Location: 17736-17830 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17736-17830 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17736-17830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQG01000163.1 Clostridioides difficile strain LC3P-135-3 NODE_163_length_1252_cov_4.88711, whole genome shotgun sequence

⇒Summary: seq-len = 1252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 637-731 bp Zoom in on locus 1 x2 CRISPR array Location: 637-731 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 637-731 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 637-731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SEQG01000011.1 Clostridioides difficile strain LC3P-135-3 NODE_11_length_88152_cov_9.45751, whole genome shotgun sequence

⇒Summary: seq-len = 88152 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37031-47909 bp Zoom in on locus 1 x21 CRISPR array Location: 37031-38371 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 37031-38371 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 38555-38821 bp Gene: cd09722:cas1 Type: universal Location: 38824-39804 bp Gene: pfam01930:cas4 Type: Type-I Location: 39807-40325 bp Gene: COG1203:cas3 Type: Type-I Location: 40373-42694 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 42705-43406 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 43408-44322 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 44324-46174 bp Gene: pfam01881:cas6 Type: other Location: 46180-46974 bp Gene: pfam13280:WYL Type: other Location: 46995-47909 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37031-38371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SEQG01000105.1 Clostridioides difficile strain LC3P-135-3 NODE_105_length_9468_cov_5.38904, whole genome shotgun sequence

⇒Summary: seq-len = 9468 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2784-3606 bp Zoom in on locus 1 x13 CRISPR array Location: 2784-3606 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2784-3606 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2784-3606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SEQG01000137.1 Clostridioides difficile strain LC3P-135-3 NODE_137_length_3109_cov_6.12877, whole genome shotgun sequence

⇒Summary: seq-len = 3109 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2390-3012 bp Zoom in on locus 1 x10 CRISPR array Location: 2390-3012 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2390-3012 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2390-3012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SEQG01000040.1 Clostridioides difficile strain LC3P-135-3 NODE_40_length_37497_cov_6.29438, whole genome shotgun sequence

⇒Summary: seq-len = 37497 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30064-30617 bp Zoom in on locus 1 x9 CRISPR array Location: 30064-30617 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 30064-30617 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30064-30617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)