CRISPRone

CRISPRone report for GCA_007001935.1_ASM700193v1

♦ Seq 1: SEQF01000030.1 Clostridioides difficile strain LC3P-135-2 NODE_30_length_52826_cov_12.6206, whole genome shotgun sequence

⇒Summary: seq-len = 52826 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEQF01000048.1 Clostridioides difficile strain LC3P-135-2 NODE_48_length_28239_cov_10.6683, whole genome shotgun sequence

⇒Summary: seq-len = 28239 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 22899-22994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEQF01000012.1 Clostridioides difficile strain LC3P-135-2 NODE_12_length_106120_cov_13.5191, whole genome shotgun sequence

⇒Summary: seq-len = 106120 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4109-4202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEQF01000008.1 Clostridioides difficile strain LC3P-135-2 NODE_8_length_118382_cov_10.89, whole genome shotgun sequence

⇒Summary: seq-len = 118382 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 53090-54102 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEQF01000017.1 Clostridioides difficile strain LC3P-135-2 NODE_17_length_80183_cov_11.0134, whole genome shotgun sequence

⇒Summary: seq-len = 80183 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 19881-20703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEQF01000019.1 Clostridioides difficile strain LC3P-135-2 NODE_19_length_78632_cov_21.3307, whole genome shotgun sequence

⇒Summary: seq-len = 78632 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEQF01000009.1 Clostridioides difficile strain LC3P-135-2 NODE_9_length_111231_cov_16.3245, whole genome shotgun sequence

⇒Summary: seq-len = 111231 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SEQF01000026.1 Clostridioides difficile strain LC3P-135-2 NODE_26_length_58293_cov_10.2961, whole genome shotgun sequence

⇒Summary: seq-len = 58293 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 19024-19648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SEQF01000031.1 Clostridioides difficile strain LC3P-135-2 NODE_31_length_52017_cov_12.8979, whole genome shotgun sequence

⇒Summary: seq-len = 52017 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2562-3115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SEQF01000033.1 Clostridioides difficile strain LC3P-135-2 NODE_33_length_50856_cov_13.9922, whole genome shotgun sequence

⇒Summary: seq-len = 50856 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SEQF01000002.1 Clostridioides difficile strain LC3P-135-2 NODE_2_length_163048_cov_16.1964, whole genome shotgun sequence

⇒Summary: seq-len = 163048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 486-1700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SEQF01000022.1 Clostridioides difficile strain LC3P-135-2 NODE_22_length_66061_cov_11.382, whole genome shotgun sequence

⇒Summary: seq-len = 66061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 56629-57251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: SEQF01000013.1 Clostridioides difficile strain LC3P-135-2 NODE_13_length_105277_cov_15.7661, whole genome shotgun sequence

⇒Summary: seq-len = 105277 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 84758-86098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: SEQF01000079.1 Clostridioides difficile strain LC3P-135-2 NODE_79_length_8087_cov_15.134, whole genome shotgun sequence

⇒Summary: seq-len = 8087 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 683-1044 bp]: array | spacers
           [Locus range 1647-2006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)