CRISPRone

CRISPRone report for GCA_007002145.1_ASM700214v1

♦ Seq 1: SEPV01000009.1 Clostridioides difficile strain LC3P-124-8 NODE_9_length_150012_cov_28.2606, whole genome shotgun sequence

⇒Summary: seq-len = 150012 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23999-26509 bp 2 Locus 2: 118893-119186 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23999-24288 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23999-24288 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 26153-26509 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 26153-26509 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118893-119186 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118893-119186 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23999-24288 bp]: array | spacers
           [Locus range 26153-26509 bp]: array | spacers
           [Locus range 118893-119186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPV01000003.1 Clostridioides difficile strain LC3P-124-8 NODE_3_length_327933_cov_30.0411, whole genome shotgun sequence

⇒Summary: seq-len = 327933 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17140-21153 bp 2 Locus 2: 97101-97787 bp 3 Locus 3: 326132-327089 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 17140-18258 bp Gene: COG2378:WYL Type: other Location: 18897-19808 bp Gene: unk Type: unknown Location: 19919-20386 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 20554-21153 bp CRISPR array Location: 97101-97787 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 97101-97787 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 326132-327089 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 326132-327089 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97101-97787 bp]: array | spacers
           [Locus range 326132-327089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPV01000002.1 Clostridioides difficile strain LC3P-124-8 NODE_2_length_426051_cov_32.4004, whole genome shotgun sequence

⇒Summary: seq-len = 426051 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70016-76548 bp Zoom in on locus 1 x10 CRISPR array Location: 70016-70638 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70016-70638 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70891-72876 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72887-73957 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73978-75144 bp Gene: pfam01881:cas6 Type: other Location: 75146-75910 bp Gene: cd09693:cas5 Type: Type-I Location: 75901-76548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70016-70638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPV01000004.1 Clostridioides difficile strain LC3P-124-8 NODE_4_length_236587_cov_28.8375, whole genome shotgun sequence

⇒Summary: seq-len = 236587 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPV01000010.1 Clostridioides difficile strain LC3P-124-8 NODE_10_length_141872_cov_32.6464, whole genome shotgun sequence

⇒Summary: seq-len = 141872 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114137-125319 bp Zoom in on locus 1 x25 CRISPR array Location: 114137-115754 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 114137-115754 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114983-115216 bp Gene: unk Type: unknown Location: 115438-115605 bp Gene: cd09725:cas2 Type: universal Location: 115938-116204 bp Gene: cd09722:cas1 Type: universal Location: 116207-117187 bp Gene: pfam01930:cas4 Type: Type-I Location: 117190-117708 bp Gene: COG1203:cas3 Type: Type-I Location: 117756-120077 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 120088-120789 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120791-121705 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121707-123584 bp Gene: pfam01881:cas6 Type: other Location: 123590-124384 bp Gene: pfam13280:WYL Type: other Location: 124405-125319 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114137-115754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPV01000001.1 Clostridioides difficile strain LC3P-124-8 NODE_1_length_762511_cov_26.5892, whole genome shotgun sequence

⇒Summary: seq-len = 762511 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112504-113328 bp 2 Locus 2: 420735-420829 bp 3 Locus 3: 462450-463075 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112504-113328 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112504-113328 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 420735-420829 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 420735-420829 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 462450-463075 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 462450-463075 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112504-113328 bp]: array | spacers
           [Locus range 420735-420829 bp]: array | spacers
           [Locus range 462450-463075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)