CRISPRone

CRISPRone report for GCA_007002155.1_ASM700215v1

♦ Seq 1: SEPT01000004.1 Clostridioides difficile strain LC3P-124-6 NODE_4_length_236822_cov_22.1343, whole genome shotgun sequence

⇒Summary: seq-len = 236822 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPT01000009.1 Clostridioides difficile strain LC3P-124-6 NODE_9_length_141872_cov_24.208, whole genome shotgun sequence

⇒Summary: seq-len = 141872 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114137-125319 bp Zoom in on locus 1 x25 CRISPR array Location: 114137-115754 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 114137-115754 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114983-115216 bp Gene: unk Type: unknown Location: 115438-115605 bp Gene: cd09725:cas2 Type: universal Location: 115938-116204 bp Gene: cd09722:cas1 Type: universal Location: 116207-117187 bp Gene: pfam01930:cas4 Type: Type-I Location: 117190-117708 bp Gene: COG1203:cas3 Type: Type-I Location: 117756-120077 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 120088-120789 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120791-121705 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121707-123584 bp Gene: pfam01881:cas6 Type: other Location: 123590-124384 bp Gene: pfam13280:WYL Type: other Location: 124405-125319 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114137-115754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPT01000008.1 Clostridioides difficile strain LC3P-124-6 NODE_8_length_149961_cov_21.8576, whole genome shotgun sequence

⇒Summary: seq-len = 149961 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23548-26058 bp 2 Locus 2: 118442-118735 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23548-23837 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23548-23837 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25702-26058 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25702-26058 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118442-118735 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118442-118735 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23548-23837 bp]: array | spacers
           [Locus range 25702-26058 bp]: array | spacers
           [Locus range 118442-118735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPT01000002.1 Clostridioides difficile strain LC3P-124-6 NODE_2_length_536084_cov_22.8123, whole genome shotgun sequence

⇒Summary: seq-len = 536084 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 845-1803 bp 2 Locus 2: 230147-230834 bp 3 Locus 3: 306781-310794 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 CRISPR array Location: 845-1803 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 845-1803 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 230147-230834 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 230147-230834 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 306781-307380 bp Gene: unk Type: unknown Location: 307548-308015 bp Gene: COG2378:WYL Type: other Location: 308120-309037 bp Gene: cas14:cas14 Type: Type-V Location: 309676-310794 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 845-1803 bp]: array | spacers
           [Locus range 230147-230834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPT01000001.1 Clostridioides difficile strain LC3P-124-6 NODE_1_length_762839_cov_20.905, whole genome shotgun sequence

⇒Summary: seq-len = 762839 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112832-113656 bp 2 Locus 2: 421063-421157 bp 3 Locus 3: 462778-463403 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112832-113656 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112832-113656 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 421063-421157 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 421063-421157 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 462778-463403 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 462778-463403 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112832-113656 bp]: array | spacers
           [Locus range 421063-421157 bp]: array | spacers
           [Locus range 462778-463403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPT01000003.1 Clostridioides difficile strain LC3P-124-6 NODE_3_length_425109_cov_23.1919, whole genome shotgun sequence

⇒Summary: seq-len = 425109 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69303-75835 bp Zoom in on locus 1 x10 CRISPR array Location: 69303-69925 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69303-69925 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70178-72163 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72174-73244 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73265-74431 bp Gene: pfam01881:cas6 Type: other Location: 74433-75197 bp Gene: cd09693:cas5 Type: Type-I Location: 75188-75835 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69303-69925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)