CRISPRone

CRISPRone report for GCA_007002205.1_ASM700220v1

♦ Seq 1: SEPR01000010.1 Clostridioides difficile strain LC3P-124-4 NODE_10_length_150100_cov_24.9024, whole genome shotgun sequence

⇒Summary: seq-len = 150100 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23687-26197 bp 2 Locus 2: 118581-118874 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23687-23976 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23687-23976 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25841-26197 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25841-26197 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118581-118874 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118581-118874 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23687-23976 bp]: array | spacers
           [Locus range 25841-26197 bp]: array | spacers
           [Locus range 118581-118874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPR01000004.1 Clostridioides difficile strain LC3P-124-4 NODE_4_length_236587_cov_25.8083, whole genome shotgun sequence

⇒Summary: seq-len = 236587 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPR01000001.1 Clostridioides difficile strain LC3P-124-4 NODE_1_length_762862_cov_23.5726, whole genome shotgun sequence

⇒Summary: seq-len = 762862 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112855-113679 bp 2 Locus 2: 421086-421180 bp 3 Locus 3: 462801-463426 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112855-113679 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112855-113679 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 421086-421180 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 421086-421180 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 462801-463426 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 462801-463426 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112855-113679 bp]: array | spacers
           [Locus range 421086-421180 bp]: array | spacers
           [Locus range 462801-463426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPR01000002.1 Clostridioides difficile strain LC3P-124-4 NODE_2_length_426132_cov_28.3635, whole genome shotgun sequence

⇒Summary: seq-len = 426132 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70250-76782 bp Zoom in on locus 1 x10 CRISPR array Location: 70250-70872 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70250-70872 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71125-73110 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73121-74191 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74212-75378 bp Gene: pfam01881:cas6 Type: other Location: 75380-76144 bp Gene: cd09693:cas5 Type: Type-I Location: 76135-76782 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70250-70872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPR01000011.1 Clostridioides difficile strain LC3P-124-4 NODE_11_length_142412_cov_28.8408, whole genome shotgun sequence

⇒Summary: seq-len = 142412 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114677-125859 bp Zoom in on locus 1 x25 CRISPR array Location: 114677-116294 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 114677-116294 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 115523-115756 bp Gene: unk Type: unknown Location: 115978-116145 bp Gene: cd09725:cas2 Type: universal Location: 116478-116744 bp Gene: cd09722:cas1 Type: universal Location: 116747-117727 bp Gene: pfam01930:cas4 Type: Type-I Location: 117730-118248 bp Gene: COG1203:cas3 Type: Type-I Location: 118296-120617 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 120628-121329 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121331-122245 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 122247-124124 bp Gene: pfam01881:cas6 Type: other Location: 124130-124924 bp Gene: pfam13280:WYL Type: other Location: 124945-125859 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114677-116294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPR01000003.1 Clostridioides difficile strain LC3P-124-4 NODE_3_length_309807_cov_25.9626, whole genome shotgun sequence

⇒Summary: seq-len = 309807 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3027 bp 2 Locus 2: 78975-79661 bp 3 Locus 3: 308006-308963 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 1-132 bp Gene: COG2378:WYL Type: other Location: 771-1682 bp Gene: unk Type: unknown Location: 1793-2260 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2428-3027 bp CRISPR array Location: 78975-79661 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78975-79661 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 308006-308963 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 308006-308963 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 78975-79661 bp]: array | spacers
           [Locus range 308006-308963 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)