CRISPRone

CRISPRone report for GCA_007002215.1_ASM700221v1

♦ Seq 1: SEPS01000005.1 Clostridioides difficile strain LC3P-124-5 NODE_5_length_236586_cov_18.2243, whole genome shotgun sequence

⇒Summary: seq-len = 236586 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPS01000010.1 Clostridioides difficile strain LC3P-124-5 NODE_10_length_149980_cov_17.7752, whole genome shotgun sequence

⇒Summary: seq-len = 149980 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23871-26381 bp 2 Locus 2: 118765-119058 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23871-24160 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23871-24160 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 26025-26381 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 26025-26381 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118765-119058 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118765-119058 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23871-24160 bp]: array | spacers
           [Locus range 26025-26381 bp]: array | spacers
           [Locus range 118765-119058 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPS01000002.1 Clostridioides difficile strain LC3P-124-5 NODE_2_length_357463_cov_16.8232, whole genome shotgun sequence

⇒Summary: seq-len = 357463 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61397-62221 bp Zoom in on locus 1 x13 CRISPR array Location: 61397-62221 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61397-62221 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61397-62221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPS01000001.1 Clostridioides difficile strain LC3P-124-5 NODE_1_length_425029_cov_21.0024, whole genome shotgun sequence

⇒Summary: seq-len = 425029 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69406-75938 bp Zoom in on locus 1 x10 CRISPR array Location: 69406-70028 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69406-70028 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70281-72266 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72277-73347 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73368-74534 bp Gene: pfam01881:cas6 Type: other Location: 74536-75300 bp Gene: cd09693:cas5 Type: Type-I Location: 75291-75938 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69406-70028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPS01000011.1 Clostridioides difficile strain LC3P-124-5 NODE_11_length_141261_cov_19.0321, whole genome shotgun sequence

⇒Summary: seq-len = 141261 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113430-124612 bp Zoom in on locus 1 x25 CRISPR array Location: 113430-115047 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113430-115047 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114276-114509 bp Gene: unk Type: unknown Location: 114731-114898 bp Gene: cd09725:cas2 Type: universal Location: 115231-115497 bp Gene: cd09722:cas1 Type: universal Location: 115500-116480 bp Gene: pfam01930:cas4 Type: Type-I Location: 116483-117001 bp Gene: COG1203:cas3 Type: Type-I Location: 117049-119370 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119381-120082 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120084-120998 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121000-122877 bp Gene: pfam01881:cas6 Type: other Location: 122883-123677 bp Gene: pfam13280:WYL Type: other Location: 123698-124612 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113430-115047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPS01000004.1 Clostridioides difficile strain LC3P-124-5 NODE_4_length_309810_cov_18.654, whole genome shotgun sequence

⇒Summary: seq-len = 309810 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3030 bp 2 Locus 2: 78978-79664 bp 3 Locus 3: 308009-308966 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 1-135 bp Gene: COG2378:WYL Type: other Location: 774-1685 bp Gene: unk Type: unknown Location: 1796-2263 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2431-3030 bp CRISPR array Location: 78978-79664 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78978-79664 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 308009-308966 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 308009-308966 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 78978-79664 bp]: array | spacers
           [Locus range 308009-308966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEPS01000003.1 Clostridioides difficile strain LC3P-124-5 NODE_3_length_354520_cov_16.5267, whole genome shotgun sequence

⇒Summary: seq-len = 354520 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299437-300063 bp 2 Locus 2: 341683-341778 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299437-300063 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299437-300063 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341683-341778 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341683-341778 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299437-300063 bp]: array | spacers
           [Locus range 341683-341778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)