CRISPRone

CRISPRone report for GCA_007002255.1_ASM700225v1

♦ Seq 1: SEPQ01000001.1 Clostridioides difficile strain LC3P-124-3 NODE_1_length_425581_cov_25.2367, whole genome shotgun sequence

⇒Summary: seq-len = 425581 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70094-76626 bp Zoom in on locus 1 x10 CRISPR array Location: 70094-70716 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70094-70716 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70969-72954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72965-74035 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74056-75222 bp Gene: pfam01881:cas6 Type: other Location: 75224-75988 bp Gene: cd09693:cas5 Type: Type-I Location: 75979-76626 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70094-70716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPQ01000005.1 Clostridioides difficile strain LC3P-124-3 NODE_5_length_236587_cov_23.2781, whole genome shotgun sequence

⇒Summary: seq-len = 236587 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPQ01000003.1 Clostridioides difficile strain LC3P-124-3 NODE_3_length_309806_cov_23.1107, whole genome shotgun sequence

⇒Summary: seq-len = 309806 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3026 bp 2 Locus 2: 78974-79660 bp 3 Locus 3: 308005-308962 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 3-131 bp Gene: COG2378:WYL Type: other Location: 770-1681 bp Gene: unk Type: unknown Location: 1792-2259 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2427-3026 bp CRISPR array Location: 78974-79660 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78974-79660 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 308005-308962 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 308005-308962 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 78974-79660 bp]: array | spacers
           [Locus range 308005-308962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPQ01000020.1 Clostridioides difficile strain LC3P-124-3 NODE_20_length_88981_cov_18.6966, whole genome shotgun sequence

⇒Summary: seq-len = 88981 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33820-34446 bp 2 Locus 2: 76066-76161 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 33820-34446 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 33820-34446 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 76066-76161 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 76066-76161 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33820-34446 bp]: array | spacers
           [Locus range 76066-76161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPQ01000010.1 Clostridioides difficile strain LC3P-124-3 NODE_10_length_150500_cov_23.5208, whole genome shotgun sequence

⇒Summary: seq-len = 150500 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24487-26997 bp 2 Locus 2: 119381-119674 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 24487-24776 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 24487-24776 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 26641-26997 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 26641-26997 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 119381-119674 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 119381-119674 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24487-24776 bp]: array | spacers
           [Locus range 26641-26997 bp]: array | spacers
           [Locus range 119381-119674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPQ01000002.1 Clostridioides difficile strain LC3P-124-3 NODE_2_length_408570_cov_21.7098, whole genome shotgun sequence

⇒Summary: seq-len = 408570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112504-113328 bp Zoom in on locus 1 x13 CRISPR array Location: 112504-113328 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112504-113328 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112504-113328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEPQ01000011.1 Clostridioides difficile strain LC3P-124-3 NODE_11_length_141550_cov_24.8424, whole genome shotgun sequence

⇒Summary: seq-len = 141550 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113815-124997 bp Zoom in on locus 1 x25 CRISPR array Location: 113815-115432 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113815-115432 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114661-114894 bp Gene: unk Type: unknown Location: 115116-115283 bp Gene: cd09725:cas2 Type: universal Location: 115616-115882 bp Gene: cd09722:cas1 Type: universal Location: 115885-116865 bp Gene: pfam01930:cas4 Type: Type-I Location: 116868-117386 bp Gene: COG1203:cas3 Type: Type-I Location: 117434-119755 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119766-120467 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120469-121383 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121385-123262 bp Gene: pfam01881:cas6 Type: other Location: 123268-124062 bp Gene: pfam13280:WYL Type: other Location: 124083-124997 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113815-115432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)