CRISPRone

CRISPRone report for GCA_007002265.1_ASM700226v1

♦ Seq 1: SEPO01000001.1 Clostridioides difficile strain LC3P-124-1 NODE_1_length_426074_cov_21.1386, whole genome shotgun sequence

⇒Summary: seq-len = 426074 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70268-76800 bp Zoom in on locus 1 x10 CRISPR array Location: 70268-70890 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70268-70890 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 71143-73128 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73139-74209 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74230-75396 bp Gene: pfam01881:cas6 Type: other Location: 75398-76162 bp Gene: cd09693:cas5 Type: Type-I Location: 76153-76800 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70268-70890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPO01000004.1 Clostridioides difficile strain LC3P-124-1 NODE_4_length_309820_cov_19.4064, whole genome shotgun sequence

⇒Summary: seq-len = 309820 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78988-79674 bp 2 Locus 2: 308019-308976 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78988-79674 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78988-79674 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 308019-308976 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 308019-308976 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78988-79674 bp]: array | spacers
           [Locus range 308019-308976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPO01000010.1 Clostridioides difficile strain LC3P-124-1 NODE_10_length_149542_cov_18.3681, whole genome shotgun sequence

⇒Summary: seq-len = 149542 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23428-25938 bp 2 Locus 2: 118322-118615 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23428-23717 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23428-23717 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25582-25938 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25582-25938 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118322-118615 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118322-118615 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23428-23717 bp]: array | spacers
           [Locus range 25582-25938 bp]: array | spacers
           [Locus range 118322-118615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPO01000003.1 Clostridioides difficile strain LC3P-124-1 NODE_3_length_347009_cov_17.6942, whole genome shotgun sequence

⇒Summary: seq-len = 347009 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299437-300063 bp 2 Locus 2: 341683-341778 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299437-300063 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299437-300063 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341683-341778 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341683-341778 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299437-300063 bp]: array | spacers
           [Locus range 341683-341778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPO01000002.1 Clostridioides difficile strain LC3P-124-1 NODE_2_length_408641_cov_17.7585, whole genome shotgun sequence

⇒Summary: seq-len = 408641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113047-113871 bp Zoom in on locus 1 x13 CRISPR array Location: 113047-113871 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113047-113871 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113047-113871 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPO01000005.1 Clostridioides difficile strain LC3P-124-1 NODE_5_length_236587_cov_19.1541, whole genome shotgun sequence

⇒Summary: seq-len = 236587 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45139-53014 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45139-47547 bp Gene: cd09693:cas5 Type: Type-I Location: 47574-48380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48396-49409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49429-50904 bp Gene: pfam01881:cas6 Type: other Location: 50909-51646 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51905-53014 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SEPO01000011.1 Clostridioides difficile strain LC3P-124-1 NODE_11_length_141831_cov_21.3272, whole genome shotgun sequence

⇒Summary: seq-len = 141831 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114096-125278 bp Zoom in on locus 1 x25 CRISPR array Location: 114096-115713 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 114096-115713 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114942-115175 bp Gene: unk Type: unknown Location: 115397-115564 bp Gene: cd09725:cas2 Type: universal Location: 115897-116163 bp Gene: cd09722:cas1 Type: universal Location: 116166-117146 bp Gene: pfam01930:cas4 Type: Type-I Location: 117149-117667 bp Gene: COG1203:cas3 Type: Type-I Location: 117715-120036 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 120047-120748 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120750-121664 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121666-123543 bp Gene: pfam01881:cas6 Type: other Location: 123549-124343 bp Gene: pfam13280:WYL Type: other Location: 124364-125278 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114096-115713 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)