CRISPRone

CRISPRone report for GCA_007002285.1_ASM700228v1

♦ Seq 1: SEPN01000002.1 Clostridioides difficile strain LC3P-119-7 NODE_2_length_377252_cov_23.7903, whole genome shotgun sequence

⇒Summary: seq-len = 377252 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44274-44632 bp 2 Locus 2: 117914-126235 bp 3 Locus 3: 289506-290123 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117914-119023 bp Gene: unk Type: unknown Location: 119457-119633 bp Gene: pfam01881:cas6 Type: other Location: 119734-120471 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120476-121951 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121971-122987 bp Gene: cd09693:cas5 Type: Type-I Location: 123003-123800 bp Gene: cd09641:cas3HD Type: Type-I Location: 123827-126235 bp CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44274-44632 bp]: array | spacers
           [Locus range 289506-290123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPN01000001.1 Clostridioides difficile strain LC3P-119-7 NODE_1_length_431852_cov_25.2838, whole genome shotgun sequence

⇒Summary: seq-len = 431852 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31440-31534 bp 2 Locus 2: 253692-264737 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 CRISPR array Location: 31440-31534 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 31440-31534 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 253692-254579 bp Gene: pfam01881:cas6 Type: other Location: 254657-255394 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 255400-257250 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257252-258166 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258168-258869 bp Gene: COG1203:cas3 Type: Type-I Location: 258880-261201 bp Gene: pfam01930:cas4 Type: Type-I Location: 261216-261767 bp Gene: cd09722:cas1 Type: universal Location: 261770-262750 bp Gene: cd09725:cas2 Type: universal Location: 262753-263019 bp CRISPR array Location: 263203-264737 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 263203-264737 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31440-31534 bp]: array | spacers
           [Locus range 263203-264737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPN01000016.1 Clostridioides difficile strain LC3P-119-7 NODE_16_length_98588_cov_20.218, whole genome shotgun sequence

⇒Summary: seq-len = 98588 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93335-93496 bp Zoom in on locus 1 x3 CRISPR array Location: 93335-93496 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93335-93496 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93335-93496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPN01000021.1 Clostridioides difficile strain LC3P-119-7 NODE_21_length_65108_cov_21.0443, whole genome shotgun sequence

⇒Summary: seq-len = 65108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60057-61206 bp Zoom in on locus 1 x18 CRISPR array Location: 60057-61206 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 60057-61206 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60057-61206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPN01000007.1 Clostridioides difficile strain LC3P-119-7 NODE_7_length_174564_cov_22.5079, whole genome shotgun sequence

⇒Summary: seq-len = 174564 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19072-19829 bp Zoom in on locus 1 x12 CRISPR array Location: 19072-19829 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 19072-19829 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19072-19829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPN01000004.1 Clostridioides difficile strain LC3P-119-7 NODE_4_length_216748_cov_23.2686, whole genome shotgun sequence

⇒Summary: seq-len = 216748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90916-91474 bp Zoom in on locus 1 x9 CRISPR array Location: 90916-91474 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90916-91474 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90916-91474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)