CRISPRone

CRISPRone report for GCA_007002325.1_ASM700232v1

♦ Seq 1: SEPM01000010.1 Clostridioides difficile strain LC3P-119-6 NODE_10_length_157775_cov_12.4646, whole genome shotgun sequence

⇒Summary: seq-len = 157775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47292-47453 bp Zoom in on locus 1 x3 CRISPR array Location: 47292-47453 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47292-47453 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47292-47453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPM01000001.1 Clostridioides difficile strain LC3P-119-6 NODE_1_length_431876_cov_14.9774, whole genome shotgun sequence

⇒Summary: seq-len = 431876 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31440-31534 bp 2 Locus 2: 253719-264764 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 CRISPR array Location: 31440-31534 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 31440-31534 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 253719-254606 bp Gene: pfam01881:cas6 Type: other Location: 254684-255421 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 255427-257277 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257279-258193 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258195-258896 bp Gene: COG1203:cas3 Type: Type-I Location: 258907-261228 bp Gene: pfam01930:cas4 Type: Type-I Location: 261243-261794 bp Gene: cd09722:cas1 Type: universal Location: 261797-262777 bp Gene: cd09725:cas2 Type: universal Location: 262780-263046 bp CRISPR array Location: 263230-264764 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 263230-264764 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31440-31534 bp]: array | spacers
           [Locus range 263230-264764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPM01000020.1 Clostridioides difficile strain LC3P-119-6 NODE_20_length_68502_cov_12.4261, whole genome shotgun sequence

⇒Summary: seq-len = 68502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3601-4751 bp Zoom in on locus 1 x18 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3601-4751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPM01000006.1 Clostridioides difficile strain LC3P-119-6 NODE_6_length_217403_cov_13.4716, whole genome shotgun sequence

⇒Summary: seq-len = 217403 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91571-92129 bp Zoom in on locus 1 x9 CRISPR array Location: 91571-92129 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91571-92129 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91571-92129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPM01000002.1 Clostridioides difficile strain LC3P-119-6 NODE_2_length_377252_cov_13.783, whole genome shotgun sequence

⇒Summary: seq-len = 377252 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44274-44632 bp 2 Locus 2: 117914-126235 bp 3 Locus 3: 289506-290123 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117914-119023 bp Gene: unk Type: unknown Location: 119457-119633 bp Gene: pfam01881:cas6 Type: other Location: 119734-120471 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120476-121951 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121971-122987 bp Gene: cd09693:cas5 Type: Type-I Location: 123003-123800 bp Gene: cd09641:cas3HD Type: Type-I Location: 123827-126235 bp CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44274-44632 bp]: array | spacers
           [Locus range 289506-290123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPM01000013.1 Clostridioides difficile strain LC3P-119-6 NODE_13_length_132023_cov_12.6332, whole genome shotgun sequence

⇒Summary: seq-len = 132023 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18469-19226 bp Zoom in on locus 1 x12 CRISPR array Location: 18469-19226 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18469-19226 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18469-19226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)