CRISPRone

CRISPRone report for GCA_007002345.1_ASM700234v1

♦ Seq 1: SEPL01000005.1 Clostridioides difficile strain LC3P-119-5 NODE_5_length_277492_cov_25.5142, whole genome shotgun sequence

⇒Summary: seq-len = 277492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104225-104982 bp Zoom in on locus 1 x12 CRISPR array Location: 104225-104982 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 104225-104982 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104225-104982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPL01000008.1 Clostridioides difficile strain LC3P-119-5 NODE_8_length_157542_cov_24.1068, whole genome shotgun sequence

⇒Summary: seq-len = 157542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47059-47220 bp Zoom in on locus 1 x3 CRISPR array Location: 47059-47220 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47059-47220 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47059-47220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPL01000003.1 Clostridioides difficile strain LC3P-119-5 NODE_3_length_517640_cov_27.7286, whole genome shotgun sequence

⇒Summary: seq-len = 517640 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252851-263922 bp 2 Locus 2: 486108-486201 bp Zoom in on locus 1 x24 Zoom in on locus 2 x2 CRISPR array Location: 252851-254384 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 252851-254384 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 254568-254834 bp Gene: cd09722:cas1 Type: universal Location: 254837-255817 bp Gene: pfam01930:cas4 Type: Type-I Location: 255820-256338 bp Gene: COG1203:cas3 Type: Type-I Location: 256386-258707 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258718-259419 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259421-260335 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260337-262187 bp Gene: pfam01881:cas6 Type: other Location: 262193-262987 bp Gene: pfam13280:WYL Type: other Location: 263008-263922 bp CRISPR array Location: 486108-486201 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 486108-486201 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252851-254384 bp]: array | spacers
           [Locus range 486108-486201 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPL01000015.1 Clostridioides difficile strain LC3P-119-5 NODE_15_length_64834_cov_23.316, whole genome shotgun sequence

⇒Summary: seq-len = 64834 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3601-4751 bp Zoom in on locus 1 x18 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3601-4751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPL01000001.1 Clostridioides difficile strain LC3P-119-5 NODE_1_length_552004_cov_27.6697, whole genome shotgun sequence

⇒Summary: seq-len = 552004 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219026-219384 bp 2 Locus 2: 292666-300987 bp 3 Locus 3: 464258-464875 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 219026-219384 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 219026-219384 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 292666-293775 bp Gene: unk Type: unknown Location: 294209-294385 bp Gene: pfam01881:cas6 Type: other Location: 294486-295223 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 295228-296703 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 296723-297739 bp Gene: cd09693:cas5 Type: Type-I Location: 297755-298552 bp Gene: cd09641:cas3HD Type: Type-I Location: 298579-300987 bp CRISPR array Location: 464258-464875 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 464258-464875 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 219026-219384 bp]: array | spacers
           [Locus range 464258-464875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPL01000004.1 Clostridioides difficile strain LC3P-119-5 NODE_4_length_342952_cov_27.5044, whole genome shotgun sequence

⇒Summary: seq-len = 342952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6090-6648 bp Zoom in on locus 1 x9 CRISPR array Location: 6090-6648 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6090-6648 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6090-6648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)