CRISPRone

CRISPRone report for GCA_007002365.1_ASM700236v1

♦ Seq 1: SEPJ01000003.1 Clostridioides difficile strain LC3P-119-3 NODE_3_length_409125_cov_30.9905, whole genome shotgun sequence

⇒Summary: seq-len = 409125 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172512-173268 bp 2 Locus 2: 283560-284118 bp Zoom in on locus 1 x12 Zoom in on locus 2 x9 CRISPR array Location: 172512-173268 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 172512-173268 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 283560-284118 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 283560-284118 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172512-173268 bp]: array | spacers
           [Locus range 283560-284118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPJ01000007.1 Clostridioides difficile strain LC3P-119-3 NODE_7_length_203791_cov_28.9604, whole genome shotgun sequence

⇒Summary: seq-len = 203791 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93335-93496 bp Zoom in on locus 1 x3 CRISPR array Location: 93335-93496 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93335-93496 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93335-93496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPJ01000018.1 Clostridioides difficile strain LC3P-119-3 NODE_18_length_68641_cov_28.9532, whole genome shotgun sequence

⇒Summary: seq-len = 68641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3740-4890 bp Zoom in on locus 1 x18 CRISPR array Location: 3740-4890 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3740-4890 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3740-4890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPJ01000002.1 Clostridioides difficile strain LC3P-119-3 NODE_2_length_431966_cov_34.8791, whole genome shotgun sequence

⇒Summary: seq-len = 431966 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167123-178194 bp 2 Locus 2: 400434-400527 bp Zoom in on locus 1 x24 Zoom in on locus 2 x2 CRISPR array Location: 167123-168656 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 167123-168656 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 168840-169106 bp Gene: cd09722:cas1 Type: universal Location: 169109-170089 bp Gene: pfam01930:cas4 Type: Type-I Location: 170092-170610 bp Gene: COG1203:cas3 Type: Type-I Location: 170658-172979 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 172990-173691 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 173693-174607 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 174609-176459 bp Gene: pfam01881:cas6 Type: other Location: 176465-177259 bp Gene: pfam13280:WYL Type: other Location: 177280-178194 bp CRISPR array Location: 400434-400527 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 400434-400527 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 167123-168656 bp]: array | spacers
           [Locus range 400434-400527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPJ01000004.1 Clostridioides difficile strain LC3P-119-3 NODE_4_length_377464_cov_32.277, whole genome shotgun sequence

⇒Summary: seq-len = 377464 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44513-44871 bp 2 Locus 2: 118153-126474 bp 3 Locus 3: 289745-290362 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44513-44871 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44513-44871 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118153-119262 bp Gene: unk Type: unknown Location: 119696-119872 bp Gene: pfam01881:cas6 Type: other Location: 119973-120710 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120715-122190 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122210-123226 bp Gene: cd09693:cas5 Type: Type-I Location: 123242-124039 bp Gene: cd09641:cas3HD Type: Type-I Location: 124066-126474 bp CRISPR array Location: 289745-290362 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289745-290362 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44513-44871 bp]: array | spacers
           [Locus range 289745-290362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)