CRISPRone

CRISPRone report for GCA_007002515.1_ASM700251v1

♦ Seq 1: SEPC01000021.1 Clostridioides difficile strain LC3P-056.5-4 NODE_21_length_49864_cov_26.6235, whole genome shotgun sequence

⇒Summary: seq-len = 49864 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43520-44674 bp Zoom in on locus 1 x18 CRISPR array Location: 43520-44674 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 43520-44674 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43520-44674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPC01000017.1 Clostridioides difficile strain LC3P-056.5-4 NODE_17_length_67276_cov_20.062, whole genome shotgun sequence

⇒Summary: seq-len = 67276 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6713-7798 bp Zoom in on locus 1 x17 CRISPR array Location: 6713-7798 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 6713-7798 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6713-7798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPC01000024.1 Clostridioides difficile strain LC3P-056.5-4 NODE_24_length_43204_cov_20.6639, whole genome shotgun sequence

⇒Summary: seq-len = 43204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2433-4976 bp Zoom in on locus 1 x39 CRISPR array Location: 2433-4976 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 2433-4976 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2433-4976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPC01000002.1 Clostridioides difficile strain LC3P-056.5-4 NODE_2_length_311205_cov_22.449, whole genome shotgun sequence

⇒Summary: seq-len = 311205 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6403-13421 bp 2 Locus 2: 212764-224762 bp Zoom in on locus 1 x13 Zoom in on locus 2 x38 Gene: cd09693:cas5 Type: Type-I Location: 6403-7050 bp Gene: pfam01881:cas6 Type: other Location: 7041-7805 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 7807-8955 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8976-10046 bp Gene: COG1203:cas3 Type: Type-I Location: 10057-12039 bp CRISPR array Location: 12605-13421 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 12605-13421 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam13280:WYL Type: other Location: 212764-213651 bp Gene: pfam01881:cas6 Type: other Location: 213729-214466 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 214472-216349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 216351-217265 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 217267-217968 bp Gene: cd09641:cas3HD Type: Type-I Location: 217979-220300 bp Gene: pfam01930:cas4 Type: Type-I Location: 220315-220866 bp Gene: cd09722:cas1 Type: universal Location: 220869-221849 bp Gene: cd09725:cas2 Type: universal Location: 221852-222118 bp CRISPR array Location: 222302-224762 bp Num of repeats: 38 Spacers: s13-s49 CRISPR array Location: 222302-224762 bp Num of repeats: 38 Spacers: s13-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12605-13421 bp]: array | spacers
           [Locus range 222302-224762 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPC01000012.1 Clostridioides difficile strain LC3P-056.5-4 NODE_12_length_111612_cov_22.2737, whole genome shotgun sequence

⇒Summary: seq-len = 111612 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18345-18706 bp 2 Locus 2: 98059-98284 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 18345-18706 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18345-18706 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98059-98284 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 98059-98284 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18345-18706 bp]: array | spacers
           [Locus range 98059-98284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPC01000001.1 Clostridioides difficile strain LC3P-056.5-4 NODE_1_length_752124_cov_22.1529, whole genome shotgun sequence

⇒Summary: seq-len = 752124 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245117-245807 bp 2 Locus 2: 319086-327404 bp 3 Locus 3: 492767-494319 bp Zoom in on locus 1 x11 Zoom in on locus 2 Zoom in on locus 3 x24 CRISPR array Location: 245117-245807 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 245117-245807 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319086-320195 bp Gene: unk Type: unknown Location: 320629-320805 bp Gene: pfam01881:cas6 Type: other Location: 320906-321643 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321648-323123 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323143-324156 bp Gene: cd09693:cas5 Type: Type-I Location: 324172-324969 bp Gene: cd09641:cas3HD Type: Type-I Location: 324996-327404 bp CRISPR array Location: 492767-494319 bp Num of repeats: 24 Spacers: s11-s33 CRISPR array Location: 492767-494319 bp Num of repeats: 24 Spacers: s11-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245117-245807 bp]: array | spacers
           [Locus range 492767-494319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)