CRISPRone

CRISPRone report for GCA_007002545.1_ASM700254v1

♦ Seq 1: SEPB01000012.1 Clostridioides difficile strain LC3P-056.5-3 NODE_12_length_93849_cov_29.0783, whole genome shotgun sequence

⇒Summary: seq-len = 93849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38229-40773 bp Zoom in on locus 1 x39 CRISPR array Location: 38229-40773 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38229-40773 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38229-40773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEPB01000004.1 Clostridioides difficile strain LC3P-056.5-3 NODE_4_length_324829_cov_33.2436, whole genome shotgun sequence

⇒Summary: seq-len = 324829 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84725-96749 bp 2 Locus 2: 296066-303083 bp Zoom in on locus 1 x38 Zoom in on locus 2 x13 CRISPR array Location: 84725-87184 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 84725-87184 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 87368-87634 bp Gene: cd09722:cas1 Type: universal Location: 87637-88617 bp Gene: pfam01930:cas4 Type: Type-I Location: 88620-89138 bp Gene: cd09641:cas3HD Type: Type-I Location: 89186-91507 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 91518-92219 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92221-93135 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 93137-95014 bp Gene: pfam01881:cas6 Type: other Location: 95020-95814 bp Gene: pfam13280:WYL Type: other Location: 95835-96749 bp CRISPR array Location: 296066-296881 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 296066-296881 bp Num of repeats: 13 Spacers: s38-s49 Gene: COG1203:cas3 Type: Type-I Location: 297447-299429 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 299440-300510 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 300531-301679 bp Gene: pfam01881:cas6 Type: other Location: 301681-302445 bp Gene: cd09693:cas5 Type: Type-I Location: 302436-303083 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 84725-87184 bp]: array | spacers
           [Locus range 296066-296881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEPB01000002.1 Clostridioides difficile strain LC3P-056.5-3 NODE_2_length_469232_cov_33.3779, whole genome shotgun sequence

⇒Summary: seq-len = 469232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91817-92901 bp Zoom in on locus 1 x17 CRISPR array Location: 91817-92901 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 91817-92901 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91817-92901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEPB01000021.1 Clostridioides difficile strain LC3P-056.5-3 NODE_21_length_49634_cov_46.5534, whole genome shotgun sequence

⇒Summary: seq-len = 49634 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-6231 bp Zoom in on locus 1 x18 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-6231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEPB01000010.1 Clostridioides difficile strain LC3P-056.5-3 NODE_10_length_114836_cov_35.9181, whole genome shotgun sequence

⇒Summary: seq-len = 114836 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18345-18706 bp 2 Locus 2: 98059-98284 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 18345-18706 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18345-18706 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 98059-98284 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 98059-98284 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18345-18706 bp]: array | spacers
           [Locus range 98059-98284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SEPB01000001.1 Clostridioides difficile strain LC3P-056.5-3 NODE_1_length_917197_cov_32.1021, whole genome shotgun sequence

⇒Summary: seq-len = 917197 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245292-245982 bp 2 Locus 2: 319261-327579 bp 3 Locus 3: 492942-494494 bp Zoom in on locus 1 x11 Zoom in on locus 2 Zoom in on locus 3 x24 CRISPR array Location: 245292-245982 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 245292-245982 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319261-320370 bp Gene: unk Type: unknown Location: 320804-320980 bp Gene: pfam01881:cas6 Type: other Location: 321081-321818 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321823-323298 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323318-324331 bp Gene: cd09693:cas5 Type: Type-I Location: 324347-325144 bp Gene: cd09641:cas3HD Type: Type-I Location: 325171-327579 bp CRISPR array Location: 492942-494494 bp Num of repeats: 24 Spacers: s11-s33 CRISPR array Location: 492942-494494 bp Num of repeats: 24 Spacers: s11-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245292-245982 bp]: array | spacers
           [Locus range 492942-494494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)