CRISPRone

CRISPRone report for GCA_007004215.1_ASM700421v1

♦ Seq 1: VJMK01000018.1 Pseudomonas aeruginosa strain GO67 NODE_18_length_91396_cov_38.673526, whole genome shotgun sequence

⇒Summary: seq-len = 91396 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43455-53834 bp Zoom in on locus 1 x14 x17 CRISPR array Location: 43455-44263 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 43455-44263 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 44523-45497 bp Gene: COG1203:cas3 Type: Type-I Location: 45494-48724 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 48782-50086 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 50073-51056 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 51067-52095 bp Gene: cd09739:cas6f Type: other Location: 52099-52662 bp CRISPR array Location: 52846-53834 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 52846-53834 bp Num of repeats: 17 Spacers: s14-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43455-44263 bp]: array | spacers
           [Locus range 52846-53834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VJMK01000002.1 Pseudomonas aeruginosa strain GO67 NODE_2_length_754630_cov_36.902703, whole genome shotgun sequence

⇒Summary: seq-len = 754630 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 544408-545517 bp Zoom in on locus 1 x19 CRISPR array Location: 544408-545517 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 544408-545517 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 544408-545517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)