CRISPRone

CRISPRone report for GCA_007004305.1_ASM700430v1

♦ Seq 1: VJMM01000020.1 Pseudomonas aeruginosa strain GO34 NODE_20_length_113756_cov_31.144954, whole genome shotgun sequence

⇒Summary: seq-len = 113756 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113447-113720 bp Zoom in on locus 1 x5 CRISPR array Location: 113447-113720 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 113447-113720 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113447-113720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VJMM01000015.1 Pseudomonas aeruginosa strain GO34 NODE_15_length_164845_cov_21.191886, whole genome shotgun sequence

⇒Summary: seq-len = 164845 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80043-92786 bp 2 Locus 2: 111374-124464 bp Zoom in on locus 1 Zoom in on locus 2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80043-80960 bp Gene: unk Type: unknown Location: 81111-82160 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82203-84188 bp Gene: unk Type: unknown Location: 84313-84777 bp Gene: unk Type: unknown Location: 91251-92162 bp Gene: cd06127:DEDDh Type: Type-I Location: 92241-92786 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 111374-111676 bp Gene: cd09641:cas3HD Type: Type-I Location: 121358-123217 bp Gene: unk Type: unknown Location: 123033-123623 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 124159-124464 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VJMM01000007.1 Pseudomonas aeruginosa strain GO34 NODE_7_length_307322_cov_29.536467, whole genome shotgun sequence

⇒Summary: seq-len = 307322 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38-11954 bp Zoom in on locus 1 x16 x29 CRISPR array Location: 38-982 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 38-982 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 1756-4437 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4440-6008 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 6005-6535 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6545-7687 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 7689-8351 bp Gene: pfam08798:cas6e Type: other Location: 8326-8937 bp Gene: cd09719:cas1 Type: universal Location: 8964-9854 bp Gene: pfam09707:cas2 Type: universal Location: 9851-10150 bp CRISPR array Location: 10215-11954 bp Num of repeats: 29 Spacers: s16-s43 CRISPR array Location: 10215-11954 bp Num of repeats: 29 Spacers: s16-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38-982 bp]: array | spacers
           [Locus range 10215-11954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)