CRISPRone

CRISPRone report for GCA_007004465.1_ASM700446v1

♦ Seq 1: VJMU01000017.1 Pseudomonas aeruginosa strain GO77 NODE_17_length_113159_cov_40.741250, whole genome shotgun sequence

⇒Summary: seq-len = 113159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-1349 bp Zoom in on locus 1 x19 CRISPR array Location: 241-1349 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 241-1349 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241-1349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VJMU01000025.1 Pseudomonas aeruginosa strain GO77 NODE_25_length_48251_cov_41.845981, whole genome shotgun sequence

⇒Summary: seq-len = 48251 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37484-48095 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 37484-38052 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 37484-38052 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 38235-38798 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38802-39830 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39841-40824 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40811-42112 bp Gene: COG1203:cas3 Type: Type-I Location: 42523-45753 bp Gene: cd09718:cas1 Type: universal Location: 45750-46724 bp CRISPR array Location: 46985-48095 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 46985-48095 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37484-38052 bp]: array | spacers
           [Locus range 46985-48095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)