CRISPRone

CRISPRone report for GCA_007004485.1_ASM700448v1

♦ Seq 1: VJNK01000028.1 Pseudomonas aeruginosa strain GO33 NODE_28_length_76383_cov_20.881754, whole genome shotgun sequence

⇒Summary: seq-len = 76383 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14879-20239 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 14879-15919 bp Gene: unk Type: unknown Location: 15916-17394 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 17420-19810 bp Gene: cls001593:casR Type: Type-I Location: 19922-20239 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VJNK01000069.1 Pseudomonas aeruginosa strain GO33 NODE_71_length_1431_cov_17.029141, whole genome shotgun sequence

⇒Summary: seq-len = 1431 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146-1254 bp Zoom in on locus 1 x19 CRISPR array Location: 146-1254 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 146-1254 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146-1254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VJNK01000017.1 Pseudomonas aeruginosa strain GO33 NODE_17_length_143605_cov_27.334490, whole genome shotgun sequence

⇒Summary: seq-len = 143605 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142681-143428 bp Zoom in on locus 1 x13 CRISPR array Location: 142681-143428 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 142681-143428 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142681-143428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VJNK01000035.1 Pseudomonas aeruginosa strain GO33 NODE_35_length_47544_cov_32.197651, whole genome shotgun sequence

⇒Summary: seq-len = 47544 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145-9980 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 145-413 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 145-413 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 673-1647 bp Gene: COG1203:cas3 Type: Type-I Location: 1644-4880 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5291-6592 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6579-7562 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7573-8601 bp Gene: cd09739:cas6f Type: other Location: 8605-9168 bp CRISPR array Location: 9353-9980 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9353-9980 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 145-413 bp]: array | spacers
           [Locus range 9353-9980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)