CRISPRone

CRISPRone report for GCA_007113935.1_ASM711393v1

♦ Seq 1: VILH01000002.1 Clostridioides difficile strain Gcol.A113 .cdiff_col_A113.2, whole genome shotgun sequence

⇒Summary: seq-len = 451056 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252231-263439 bp Zoom in on locus 1 x26 CRISPR array Location: 252231-253901 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 252231-253901 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 254085-254351 bp Gene: cd09722:cas1 Type: universal Location: 254354-255334 bp Gene: pfam01930:cas4 Type: Type-I Location: 255337-255855 bp Gene: COG1203:cas3 Type: Type-I Location: 255903-258224 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258235-258936 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258938-259852 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259854-261704 bp Gene: pfam01881:cas6 Type: other Location: 261710-262504 bp Gene: pfam13280:WYL Type: other Location: 262525-263439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252231-253901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILH01000001.1 Clostridioides difficile strain Gcol.A113 .cdiff_col_A113.1, whole genome shotgun sequence

⇒Summary: seq-len = 1872944 bp; # of CRISPR array = 10; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212876-213235 bp 2 Locus 2: 286504-294369 bp 3 Locus 3: 459807-460889 bp 4 Locus 4: 757225-758635 bp 5 Locus 5: 804305-804465 bp 6 Locus 6: 1119308-1121046 bp 7 Locus 7: 1267768-1269416 bp 8 Locus 8: 1359681-1360238 bp 9 Locus 9: 1470581-1470936 bp 10 Locus 10: 1676541-1677160 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x3 Zoom in on locus 6 x27 Zoom in on locus 7 x14 x3 Zoom in on locus 8 x9 Zoom in on locus 9 x6 Zoom in on locus 10 x10 CRISPR array Location: 212876-213235 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 212876-213235 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 286504-287613 bp Gene: pfam01881:cas6 Type: other Location: 287871-288608 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 288613-290088 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 290108-291121 bp Gene: cd09693:cas5 Type: Type-I Location: 291137-291934 bp Gene: cd09641:cas3HD Type: Type-I Location: 291961-294369 bp CRISPR array Location: 459807-460889 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 459807-460889 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 757225-758635 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 757225-758635 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 804305-804465 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 804305-804465 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 1119308-1121046 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1119308-1121046 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1267768-1268653 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1267768-1268653 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1269256-1269416 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1269256-1269416 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1359681-1360238 bp Num of repeats: 9 Spacers: s86-s93 CRISPR array Location: 1359681-1360238 bp Num of repeats: 9 Spacers: s86-s93 CRISPR array Location: 1470581-1470936 bp Num of repeats: 6 Spacers: s94-s98 CRISPR array Location: 1470581-1470936 bp Num of repeats: 6 Spacers: s94-s98 CRISPR array Location: 1676541-1677160 bp Num of repeats: 10 Spacers: s99-s107 CRISPR array Location: 1676541-1677160 bp Num of repeats: 10 Spacers: s99-s107 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212876-213235 bp]: array | spacers
           [Locus range 459807-460889 bp]: array | spacers
           [Locus range 757225-758635 bp]: array | spacers
           [Locus range 804305-804465 bp]: array | spacers
           [Locus range 1119308-1121046 bp]: array | spacers
           [Locus range 1267768-1268653 bp]: array | spacers
           [Locus range 1269256-1269416 bp]: array | spacers
           [Locus range 1359681-1360238 bp]: array | spacers
           [Locus range 1470581-1470936 bp]: array | spacers
           [Locus range 1676541-1677160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILH01000003.1 Clostridioides difficile strain Gcol.A113 .cdiff_col_A113.3, whole genome shotgun sequence

⇒Summary: seq-len = 443693 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71041-78323 bp Zoom in on locus 1 x17 CRISPR array Location: 71041-72120 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 71041-72120 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 72687-74669 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 74680-75750 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 75771-76919 bp Gene: pfam01881:cas6 Type: other Location: 76921-77685 bp Gene: cd09693:cas5 Type: Type-I Location: 77676-78323 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71041-72120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)