CRISPRone

CRISPRone report for GCA_007113975.1_ASM711397v1

♦ Seq 1: VILI01000003.1 Clostridioides difficile strain Gcol.A112 .cdiff_col_A112.3, whole genome shotgun sequence

⇒Summary: seq-len = 443686 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 365371-372654 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 365371-366018 bp Gene: pfam01881:cas6 Type: other Location: 366009-366773 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 366775-367923 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 367944-369014 bp Gene: COG1203:cas3 Type: Type-I Location: 369025-371007 bp CRISPR array Location: 371574-372654 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 371574-372654 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 371574-372654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILI01000001.1 Clostridioides difficile strain Gcol.A112 .cdiff_col_A112.1, whole genome shotgun sequence

⇒Summary: seq-len = 1872915 bp; # of CRISPR array = 10; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212847-213206 bp 2 Locus 2: 286475-294340 bp 3 Locus 3: 459778-460860 bp 4 Locus 4: 757196-758606 bp 5 Locus 5: 804276-804436 bp 6 Locus 6: 1119279-1121017 bp 7 Locus 7: 1267739-1269387 bp 8 Locus 8: 1359652-1360209 bp 9 Locus 9: 1470552-1470907 bp 10 Locus 10: 1676512-1677131 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x3 Zoom in on locus 6 x27 Zoom in on locus 7 x14 x3 Zoom in on locus 8 x9 Zoom in on locus 9 x6 Zoom in on locus 10 x10 CRISPR array Location: 212847-213206 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 212847-213206 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 286475-287584 bp Gene: pfam01881:cas6 Type: other Location: 287842-288579 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 288584-290059 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 290079-291092 bp Gene: cd09693:cas5 Type: Type-I Location: 291108-291905 bp Gene: cd09641:cas3HD Type: Type-I Location: 291932-294340 bp CRISPR array Location: 459778-460860 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 459778-460860 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 757196-758606 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 757196-758606 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 804276-804436 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 804276-804436 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 1119279-1121017 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1119279-1121017 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1267739-1268624 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1267739-1268624 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1269227-1269387 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1269227-1269387 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1359652-1360209 bp Num of repeats: 9 Spacers: s86-s93 CRISPR array Location: 1359652-1360209 bp Num of repeats: 9 Spacers: s86-s93 CRISPR array Location: 1470552-1470907 bp Num of repeats: 6 Spacers: s94-s98 CRISPR array Location: 1470552-1470907 bp Num of repeats: 6 Spacers: s94-s98 CRISPR array Location: 1676512-1677131 bp Num of repeats: 10 Spacers: s99-s107 CRISPR array Location: 1676512-1677131 bp Num of repeats: 10 Spacers: s99-s107 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212847-213206 bp]: array | spacers
           [Locus range 459778-460860 bp]: array | spacers
           [Locus range 757196-758606 bp]: array | spacers
           [Locus range 804276-804436 bp]: array | spacers
           [Locus range 1119279-1121017 bp]: array | spacers
           [Locus range 1267739-1268624 bp]: array | spacers
           [Locus range 1269227-1269387 bp]: array | spacers
           [Locus range 1359652-1360209 bp]: array | spacers
           [Locus range 1470552-1470907 bp]: array | spacers
           [Locus range 1676512-1677131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILI01000002.1 Clostridioides difficile strain Gcol.A112 .cdiff_col_A112.2, whole genome shotgun sequence

⇒Summary: seq-len = 450699 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252149-263357 bp Zoom in on locus 1 x26 CRISPR array Location: 252149-253819 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 252149-253819 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 254003-254269 bp Gene: cd09722:cas1 Type: universal Location: 254272-255252 bp Gene: pfam01930:cas4 Type: Type-I Location: 255255-255773 bp Gene: COG1203:cas3 Type: Type-I Location: 255821-258142 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258153-258854 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258856-259770 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259772-261622 bp Gene: pfam01881:cas6 Type: other Location: 261628-262422 bp Gene: pfam13280:WYL Type: other Location: 262443-263357 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252149-253819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)