CRISPRone

CRISPRone report for GCA_007114005.1_ASM711400v1

♦ Seq 1: VILJ01000001.1 Clostridioides difficile strain Gcol.A111 .cdiff_col_A111.1, whole genome shotgun sequence

⇒Summary: seq-len = 1872932 bp; # of CRISPR array = 10; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195785-196405 bp 2 Locus 2: 402009-402365 bp 3 Locus 3: 512707-513265 bp 4 Locus 4: 603529-605178 bp 5 Locus 5: 751899-753638 bp 6 Locus 6: 1068481-1068640 bp 7 Locus 7: 1114311-1115720 bp 8 Locus 8: 1412057-1413138 bp 9 Locus 9: 1578576-1586441 bp 10 Locus 10: 1659711-1660069 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 Zoom in on locus 3 x9 Zoom in on locus 4 x3 x14 Zoom in on locus 5 x27 Zoom in on locus 6 x3 Zoom in on locus 7 x22 Zoom in on locus 8 x17 Zoom in on locus 9 Zoom in on locus 10 x6 CRISPR array Location: 195785-196405 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 195785-196405 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 402009-402365 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 402009-402365 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 512707-513265 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 512707-513265 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 603529-603690 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 603529-603690 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 604292-605178 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 604292-605178 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 751899-753638 bp Num of repeats: 27 Spacers: s38-s63 CRISPR array Location: 751899-753638 bp Num of repeats: 27 Spacers: s38-s63 CRISPR array Location: 1068481-1068640 bp Num of repeats: 3 Spacers: s64-s65 CRISPR array Location: 1068481-1068640 bp Num of repeats: 3 Spacers: s64-s65 CRISPR array Location: 1114311-1115720 bp Num of repeats: 22 Spacers: s66-s86 CRISPR array Location: 1114311-1115720 bp Num of repeats: 22 Spacers: s66-s86 CRISPR array Location: 1412057-1413138 bp Num of repeats: 17 Spacers: s87-s102 CRISPR array Location: 1412057-1413138 bp Num of repeats: 17 Spacers: s87-s102 Gene: cd09641:cas3HD Type: Type-I Location: 1578576-1580984 bp Gene: cd09693:cas5 Type: Type-I Location: 1581011-1581808 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1581824-1582837 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1582857-1584332 bp Gene: pfam01881:cas6 Type: other Location: 1584337-1585074 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1585332-1586441 bp CRISPR array Location: 1659711-1660069 bp Num of repeats: 6 Spacers: s103-s107 CRISPR array Location: 1659711-1660069 bp Num of repeats: 6 Spacers: s103-s107 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 195785-196405 bp]: array | spacers
           [Locus range 402009-402365 bp]: array | spacers
           [Locus range 512707-513265 bp]: array | spacers
           [Locus range 603529-603690 bp]: array | spacers
           [Locus range 604292-605178 bp]: array | spacers
           [Locus range 751899-753638 bp]: array | spacers
           [Locus range 1068481-1068640 bp]: array | spacers
           [Locus range 1114311-1115720 bp]: array | spacers
           [Locus range 1412057-1413138 bp]: array | spacers
           [Locus range 1659711-1660069 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILJ01000003.1 Clostridioides difficile strain Gcol.A111 .cdiff_col_A111.3, whole genome shotgun sequence

⇒Summary: seq-len = 444095 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71436-78718 bp Zoom in on locus 1 x17 CRISPR array Location: 71436-72515 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 71436-72515 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 73082-75064 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 75075-76145 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 76166-77314 bp Gene: pfam01881:cas6 Type: other Location: 77316-78080 bp Gene: cd09693:cas5 Type: Type-I Location: 78071-78718 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71436-72515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILJ01000002.1 Clostridioides difficile strain Gcol.A111 .cdiff_col_A111.2, whole genome shotgun sequence

⇒Summary: seq-len = 450789 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187367-198549 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 187367-188254 bp Gene: pfam01881:cas6 Type: other Location: 188332-189069 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 189075-190925 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 190927-191841 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 191843-192544 bp Gene: COG1203:cas3 Type: Type-I Location: 192555-194876 bp Gene: pfam01930:cas4 Type: Type-I Location: 194891-195442 bp Gene: cd09722:cas1 Type: universal Location: 195445-196425 bp Gene: cd09725:cas2 Type: universal Location: 196428-196694 bp CRISPR array Location: 196878-198549 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 196878-198549 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196878-198549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)