CRISPRone

CRISPRone report for GCA_007114015.1_ASM711401v1

♦ Seq 1: VILK01000003.1 Clostridioides difficile strain Gcol.A110 .cdiff_col_A110.3, whole genome shotgun sequence

⇒Summary: seq-len = 451460 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188108-199290 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 188108-188995 bp Gene: pfam01881:cas6 Type: other Location: 189073-189810 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 189816-191666 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 191668-192582 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 192584-193285 bp Gene: COG1203:cas3 Type: Type-I Location: 193296-195617 bp Gene: pfam01930:cas4 Type: Type-I Location: 195632-196183 bp Gene: cd09722:cas1 Type: universal Location: 196186-197166 bp Gene: cd09725:cas2 Type: universal Location: 197169-197435 bp CRISPR array Location: 197619-199290 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 197619-199290 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 197619-199290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILK01000002.1 Clostridioides difficile strain Gcol.A110 .cdiff_col_A110.2, whole genome shotgun sequence

⇒Summary: seq-len = 494527 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92164-92519 bp 2 Locus 2: 298124-298743 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 92164-92519 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 92164-92519 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 298124-298743 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 298124-298743 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92164-92519 bp]: array | spacers
           [Locus range 298124-298743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILK01000001.1 Clostridioides difficile strain Gcol.A110 .cdiff_col_A110.1, whole genome shotgun sequence

⇒Summary: seq-len = 1378585 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212868-213227 bp 2 Locus 2: 286496-294361 bp 3 Locus 3: 459799-460881 bp 4 Locus 4: 757217-758627 bp 5 Locus 5: 804297-804457 bp 6 Locus 6: 1119300-1121038 bp 7 Locus 7: 1267760-1269408 bp 8 Locus 8: 1359673-1360230 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x3 Zoom in on locus 6 x27 Zoom in on locus 7 x14 x3 Zoom in on locus 8 x9 CRISPR array Location: 212868-213227 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 212868-213227 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 286496-287605 bp Gene: pfam01881:cas6 Type: other Location: 287863-288600 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 288605-290080 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 290100-291113 bp Gene: cd09693:cas5 Type: Type-I Location: 291129-291926 bp Gene: cd09641:cas3HD Type: Type-I Location: 291953-294361 bp CRISPR array Location: 459799-460881 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 459799-460881 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 757217-758627 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 757217-758627 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 804297-804457 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 804297-804457 bp Num of repeats: 3 Spacers: s43-s44 CRISPR array Location: 1119300-1121038 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1119300-1121038 bp Num of repeats: 27 Spacers: s45-s70 CRISPR array Location: 1267760-1268645 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1267760-1268645 bp Num of repeats: 14 Spacers: s71-s83 CRISPR array Location: 1269248-1269408 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1269248-1269408 bp Num of repeats: 3 Spacers: s84-s85 CRISPR array Location: 1359673-1360230 bp Num of repeats: 9 Spacers: s86-s93 CRISPR array Location: 1359673-1360230 bp Num of repeats: 9 Spacers: s86-s93 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212868-213227 bp]: array | spacers
           [Locus range 459799-460881 bp]: array | spacers
           [Locus range 757217-758627 bp]: array | spacers
           [Locus range 804297-804457 bp]: array | spacers
           [Locus range 1119300-1121038 bp]: array | spacers
           [Locus range 1267760-1268645 bp]: array | spacers
           [Locus range 1269248-1269408 bp]: array | spacers
           [Locus range 1359673-1360230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VILK01000004.1 Clostridioides difficile strain Gcol.A110 .cdiff_col_A110.4, whole genome shotgun sequence

⇒Summary: seq-len = 444431 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 365371-372654 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 365371-366018 bp Gene: pfam01881:cas6 Type: other Location: 366009-366773 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 366775-367923 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 367944-369014 bp Gene: COG1203:cas3 Type: Type-I Location: 369025-371007 bp CRISPR array Location: 371574-372654 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 371574-372654 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 371574-372654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)