CRISPRone

CRISPRone report for GCA_007114045.1_ASM711404v1

♦ Seq 1: VILM01000001.1 Clostridioides difficile strain Gcol.A96 .cdiff_col_A96.1, whole genome shotgun sequence

⇒Summary: seq-len = 1203759 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38399-38760 bp 2 Locus 2: 356585-356746 bp 3 Locus 3: 512201-524257 bp 4 Locus 4: 713760-714510 bp 5 Locus 5: 876478-884343 bp 6 Locus 6: 957591-958148 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38399-38760 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38399-38760 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356585-356746 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356585-356746 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512201-512491 bp Gene: cd09722:cas1 Type: universal Location: 512702-513709 bp Gene: pfam01930:cas4 Type: Type-I Location: 513735-514229 bp CRISPR array Location: 514314-517315 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 514314-517315 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 517505-520063 bp Gene: cd09693:cas5 Type: Type-I Location: 520087-520827 bp Gene: pfam05107:cas7b Type: Type-I Location: 520829-521818 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521811-523550 bp Gene: cd09652:cas6 Type: other Location: 523562-524257 bp CRISPR array Location: 713760-714510 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 713760-714510 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 876478-878886 bp Gene: cd09693:cas5 Type: Type-I Location: 878913-879710 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879726-880739 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880759-882234 bp Gene: pfam01881:cas6 Type: other Location: 882239-882976 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 883234-884343 bp CRISPR array Location: 957591-958148 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 957591-958148 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38399-38760 bp]: array | spacers
           [Locus range 356585-356746 bp]: array | spacers
           [Locus range 514314-517315 bp]: array | spacers
           [Locus range 713760-714510 bp]: array | spacers
           [Locus range 957591-958148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILM01000004.1 Clostridioides difficile strain Gcol.A96 .cdiff_col_A96.4, whole genome shotgun sequence

⇒Summary: seq-len = 631107 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383957-384378 bp 2 Locus 2: 494672-494899 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 CRISPR array Location: 383957-384378 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383957-384378 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494672-494899 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494672-494899 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383957-384378 bp]: array | spacers
           [Locus range 494672-494899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)