CRISPRone

CRISPRone report for GCA_007114055.1_ASM711405v1

♦ Seq 1: VILL01000004.1 Clostridioides difficile strain Gcol.A97 .cdiff_col_A97.4, whole genome shotgun sequence

⇒Summary: seq-len = 630839 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135942-136168 bp 2 Locus 2: 246463-246883 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135942-136168 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135942-136168 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246463-246883 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246463-246883 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135942-136168 bp]: array | spacers
           [Locus range 246463-246883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILL01000001.1 Clostridioides difficile strain Gcol.A97 .cdiff_col_A97.1, whole genome shotgun sequence

⇒Summary: seq-len = 1203756 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245612-246170 bp 2 Locus 2: 319417-327282 bp 3 Locus 3: 489250-490001 bp 4 Locus 4: 679503-691559 bp 5 Locus 5: 847014-847176 bp 6 Locus 6: 1165001-1165361 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 245612-246170 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 245612-246170 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319417-320526 bp Gene: pfam01881:cas6 Type: other Location: 320784-321521 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321526-323001 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323021-324034 bp Gene: cd09693:cas5 Type: Type-I Location: 324050-324847 bp Gene: cd09641:cas3HD Type: Type-I Location: 324874-327282 bp CRISPR array Location: 489250-490001 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 489250-490001 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 679503-680198 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 680210-681949 bp Gene: pfam05107:cas7b Type: Type-I Location: 681942-682931 bp Gene: cd09693:cas5 Type: Type-I Location: 682933-683673 bp Gene: cd09641:cas3HD Type: Type-I Location: 683697-686255 bp CRISPR array Location: 686445-689447 bp Num of repeats: 46 Spacers: s20-s64 CRISPR array Location: 686445-689447 bp Num of repeats: 46 Spacers: s20-s64 Gene: pfam01930:cas4 Type: Type-I Location: 689531-690025 bp Gene: cd09722:cas1 Type: universal Location: 690051-691058 bp Gene: cd09725:cas2 Type: universal Location: 691269-691559 bp CRISPR array Location: 847014-847176 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 847014-847176 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 1165001-1165361 bp Num of repeats: 6 Spacers: s67-s71 CRISPR array Location: 1165001-1165361 bp Num of repeats: 6 Spacers: s67-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245612-246170 bp]: array | spacers
           [Locus range 489250-490001 bp]: array | spacers
           [Locus range 686445-689447 bp]: array | spacers
           [Locus range 847014-847176 bp]: array | spacers
           [Locus range 1165001-1165361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)