CRISPRone

CRISPRone report for GCA_007114075.1_ASM711407v1

♦ Seq 1: VILO01000001.1 Clostridioides difficile strain Gcol.A94 .cdiff_col_A94.1, whole genome shotgun sequence

⇒Summary: seq-len = 1330679 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166149-166510 bp 2 Locus 2: 484335-484496 bp 3 Locus 3: 639951-652007 bp 4 Locus 4: 841510-842260 bp 5 Locus 5: 1004228-1012093 bp 6 Locus 6: 1085341-1085898 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166149-166510 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 166149-166510 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 484335-484496 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 484335-484496 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 639951-640241 bp Gene: cd09722:cas1 Type: universal Location: 640452-641459 bp Gene: pfam01930:cas4 Type: Type-I Location: 641485-641979 bp CRISPR array Location: 642064-645065 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 642064-645065 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 645255-647813 bp Gene: cd09693:cas5 Type: Type-I Location: 647837-648577 bp Gene: pfam05107:cas7b Type: Type-I Location: 648579-649568 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 649561-651300 bp Gene: cd09652:cas6 Type: other Location: 651312-652007 bp CRISPR array Location: 841510-842260 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 841510-842260 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 1004228-1006636 bp Gene: cd09693:cas5 Type: Type-I Location: 1006663-1007460 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1007476-1008489 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1008509-1009984 bp Gene: pfam01881:cas6 Type: other Location: 1009989-1010726 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1010984-1012093 bp CRISPR array Location: 1085341-1085898 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 1085341-1085898 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166149-166510 bp]: array | spacers
           [Locus range 484335-484496 bp]: array | spacers
           [Locus range 642064-645065 bp]: array | spacers
           [Locus range 841510-842260 bp]: array | spacers
           [Locus range 1085341-1085898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILO01000004.1 Clostridioides difficile strain Gcol.A94 .cdiff_col_A94.4, whole genome shotgun sequence

⇒Summary: seq-len = 630884 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135987-136213 bp 2 Locus 2: 246508-246928 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135987-136213 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135987-136213 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246508-246928 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246508-246928 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135987-136213 bp]: array | spacers
           [Locus range 246508-246928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)