CRISPRone

CRISPRone report for GCA_007114095.1_ASM711409v1

♦ Seq 1: VILN01000007.1 Clostridioides difficile strain Gcol.A95 .cdiff_col_A95.7, whole genome shotgun sequence

⇒Summary: seq-len = 218077 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125703-126917 bp Zoom in on locus 1 x19 CRISPR array Location: 125703-126917 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 125703-126917 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125703-126917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILN01000002.1 Clostridioides difficile strain Gcol.A95 .cdiff_col_A95.2, whole genome shotgun sequence

⇒Summary: seq-len = 451861 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 277173-288450 bp Zoom in on locus 1 x27 CRISPR array Location: 277173-278912 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 277173-278912 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 279096-279362 bp Gene: cd09722:cas1 Type: universal Location: 279365-280345 bp Gene: pfam01930:cas4 Type: Type-I Location: 280348-280866 bp Gene: COG1203:cas3 Type: Type-I Location: 280914-283235 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 283246-283947 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 283949-284863 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 284865-286715 bp Gene: pfam01881:cas6 Type: other Location: 286721-287515 bp Gene: pfam13280:WYL Type: other Location: 287536-288450 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 277173-278912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILN01000001.1 Clostridioides difficile strain Gcol.A95 .cdiff_col_A95.1, whole genome shotgun sequence

⇒Summary: seq-len = 1423545 bp; # of CRISPR array = 7; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241558-242515 bp 2 Locus 2: 315739-324076 bp 3 Locus 3: 489596-490352 bp 4 Locus 4: 846047-846209 bp 5 Locus 5: 1173076-1173963 bp 6 Locus 6: 1313079-1314532 bp 7 Locus 7: 1405186-1405679 bp Zoom in on locus 1 x15 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x3 Zoom in on locus 5 x14 Zoom in on locus 6 x7 x7 Zoom in on locus 7 x8 CRISPR array Location: 241558-242515 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 241558-242515 bp Num of repeats: 15 Spacers: s1-s14 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315739-316848 bp Gene: unk Type: unknown Location: 317302-317478 bp Gene: pfam01881:cas6 Type: other Location: 317579-318316 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 318321-319787 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 319806-320819 bp Gene: cd09693:cas5 Type: Type-I Location: 320835-321641 bp Gene: cd09641:cas3HD Type: Type-I Location: 321668-324076 bp CRISPR array Location: 489596-490352 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 489596-490352 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 846047-846209 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 846047-846209 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 1173076-1173963 bp Num of repeats: 14 Spacers: s28-s40 CRISPR array Location: 1173076-1173963 bp Num of repeats: 14 Spacers: s28-s40 CRISPR array Location: 1313079-1313502 bp Num of repeats: 7 Spacers: s41-s46 CRISPR array Location: 1313079-1313502 bp Num of repeats: 7 Spacers: s41-s46 CRISPR array Location: 1314106-1314532 bp Num of repeats: 7 Spacers: s47-s52 CRISPR array Location: 1314106-1314532 bp Num of repeats: 7 Spacers: s47-s52 CRISPR array Location: 1405186-1405679 bp Num of repeats: 8 Spacers: s53-s59 CRISPR array Location: 1405186-1405679 bp Num of repeats: 8 Spacers: s53-s59 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241558-242515 bp]: array | spacers
           [Locus range 489596-490352 bp]: array | spacers
           [Locus range 846047-846209 bp]: array | spacers
           [Locus range 1173076-1173963 bp]: array | spacers
           [Locus range 1313079-1313502 bp]: array | spacers
           [Locus range 1314106-1314532 bp]: array | spacers
           [Locus range 1405186-1405679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)