CRISPRone

CRISPRone report for GCA_007114155.1_ASM711415v1

♦ Seq 1: VILS01000003.1 Clostridioides difficile strain Gcol.A90 .cdiff_col_A90.3, whole genome shotgun sequence

⇒Summary: seq-len = 644935 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135924-136150 bp 2 Locus 2: 246445-246865 bp 3 Locus 3: 455008-455300 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 135924-136150 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135924-136150 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246445-246865 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246445-246865 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455008-455300 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455008-455300 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135924-136150 bp]: array | spacers
           [Locus range 246445-246865 bp]: array | spacers
           [Locus range 455008-455300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILS01000001.1 Clostridioides difficile strain Gcol.A90 .cdiff_col_A90.1, whole genome shotgun sequence

⇒Summary: seq-len = 1331411 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166149-166510 bp 2 Locus 2: 484371-484532 bp 3 Locus 3: 639985-652041 bp 4 Locus 4: 841544-842162 bp 5 Locus 5: 1004130-1011995 bp 6 Locus 6: 1085243-1085800 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x10 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166149-166510 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 166149-166510 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 484371-484532 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 484371-484532 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 639985-640275 bp Gene: cd09722:cas1 Type: universal Location: 640486-641493 bp Gene: pfam01930:cas4 Type: Type-I Location: 641519-642013 bp CRISPR array Location: 642098-645099 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 642098-645099 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 645289-647847 bp Gene: cd09693:cas5 Type: Type-I Location: 647871-648611 bp Gene: pfam05107:cas7b Type: Type-I Location: 648613-649602 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 649595-651334 bp Gene: cd09652:cas6 Type: other Location: 651346-652041 bp CRISPR array Location: 841544-842162 bp Num of repeats: 10 Spacers: s53-s61 CRISPR array Location: 841544-842162 bp Num of repeats: 10 Spacers: s53-s61 Gene: cd09641:cas3HD Type: Type-I Location: 1004130-1006538 bp Gene: cd09693:cas5 Type: Type-I Location: 1006565-1007362 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1007378-1008391 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1008411-1009886 bp Gene: pfam01881:cas6 Type: other Location: 1009891-1010628 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1010886-1011995 bp CRISPR array Location: 1085243-1085800 bp Num of repeats: 9 Spacers: s62-s69 CRISPR array Location: 1085243-1085800 bp Num of repeats: 9 Spacers: s62-s69 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166149-166510 bp]: array | spacers
           [Locus range 484371-484532 bp]: array | spacers
           [Locus range 642098-645099 bp]: array | spacers
           [Locus range 841544-842162 bp]: array | spacers
           [Locus range 1085243-1085800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)