CRISPRone

CRISPRone report for GCA_007114195.1_ASM711419v1

♦ Seq 1: VILU01000003.1 Clostridioides difficile strain Gcol.A88 .cdiff_col_A88.3, whole genome shotgun sequence

⇒Summary: seq-len = 646121 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189636-189929 bp 2 Locus 2: 398071-398492 bp 3 Locus 3: 508786-509013 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189636-189929 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189636-189929 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 398071-398492 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 398071-398492 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 508786-509013 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 508786-509013 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189636-189929 bp]: array | spacers
           [Locus range 398071-398492 bp]: array | spacers
           [Locus range 508786-509013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILU01000001.1 Clostridioides difficile strain Gcol.A88 .cdiff_col_A88.1, whole genome shotgun sequence

⇒Summary: seq-len = 1203659 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245612-246170 bp 2 Locus 2: 319417-327282 bp 3 Locus 3: 489250-489869 bp 4 Locus 4: 679371-691427 bp 5 Locus 5: 846880-847042 bp 6 Locus 6: 1164903-1165263 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 245612-246170 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 245612-246170 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319417-320526 bp Gene: pfam01881:cas6 Type: other Location: 320784-321521 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321526-323001 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323021-324034 bp Gene: cd09693:cas5 Type: Type-I Location: 324050-324847 bp Gene: cd09641:cas3HD Type: Type-I Location: 324874-327282 bp CRISPR array Location: 489250-489869 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 489250-489869 bp Num of repeats: 10 Spacers: s9-s17 Gene: cd09652:cas6 Type: other Location: 679371-680066 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 680078-681817 bp Gene: pfam05107:cas7b Type: Type-I Location: 681810-682799 bp Gene: cd09693:cas5 Type: Type-I Location: 682801-683541 bp Gene: cd09641:cas3HD Type: Type-I Location: 683565-686123 bp CRISPR array Location: 686313-689315 bp Num of repeats: 46 Spacers: s18-s62 CRISPR array Location: 686313-689315 bp Num of repeats: 46 Spacers: s18-s62 Gene: pfam01930:cas4 Type: Type-I Location: 689399-689893 bp Gene: cd09722:cas1 Type: universal Location: 689919-690926 bp Gene: cd09725:cas2 Type: universal Location: 691137-691427 bp CRISPR array Location: 846880-847042 bp Num of repeats: 3 Spacers: s63-s64 CRISPR array Location: 846880-847042 bp Num of repeats: 3 Spacers: s63-s64 CRISPR array Location: 1164903-1165263 bp Num of repeats: 6 Spacers: s65-s69 CRISPR array Location: 1164903-1165263 bp Num of repeats: 6 Spacers: s65-s69 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245612-246170 bp]: array | spacers
           [Locus range 489250-489869 bp]: array | spacers
           [Locus range 686313-689315 bp]: array | spacers
           [Locus range 846880-847042 bp]: array | spacers
           [Locus range 1164903-1165263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)