CRISPRone

CRISPRone report for GCA_007114205.1_ASM711420v1

♦ Seq 1: VILT01000001.1 Clostridioides difficile strain Gcol.A89 .cdiff_col_A89.1, whole genome shotgun sequence

⇒Summary: seq-len = 1202795 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38393-38754 bp 2 Locus 2: 356615-356776 bp 3 Locus 3: 512229-524285 bp 4 Locus 4: 713788-714406 bp 5 Locus 5: 876374-884239 bp 6 Locus 6: 957487-958044 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x10 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38393-38754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38393-38754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356615-356776 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356615-356776 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512229-512519 bp Gene: cd09722:cas1 Type: universal Location: 512730-513737 bp Gene: pfam01930:cas4 Type: Type-I Location: 513763-514257 bp CRISPR array Location: 514342-517343 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 514342-517343 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 517533-520091 bp Gene: cd09693:cas5 Type: Type-I Location: 520115-520855 bp Gene: pfam05107:cas7b Type: Type-I Location: 520857-521846 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521839-523578 bp Gene: cd09652:cas6 Type: other Location: 523590-524285 bp CRISPR array Location: 713788-714406 bp Num of repeats: 10 Spacers: s53-s61 CRISPR array Location: 713788-714406 bp Num of repeats: 10 Spacers: s53-s61 Gene: cd09641:cas3HD Type: Type-I Location: 876374-878782 bp Gene: cd09693:cas5 Type: Type-I Location: 878809-879606 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879622-880635 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880655-882130 bp Gene: pfam01881:cas6 Type: other Location: 882135-882872 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 883130-884239 bp CRISPR array Location: 957487-958044 bp Num of repeats: 9 Spacers: s62-s69 CRISPR array Location: 957487-958044 bp Num of repeats: 9 Spacers: s62-s69 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38393-38754 bp]: array | spacers
           [Locus range 356615-356776 bp]: array | spacers
           [Locus range 514342-517343 bp]: array | spacers
           [Locus range 713788-714406 bp]: array | spacers
           [Locus range 957487-958044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILT01000003.1 Clostridioides difficile strain Gcol.A89 .cdiff_col_A89.3, whole genome shotgun sequence

⇒Summary: seq-len = 645552 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136541-136767 bp 2 Locus 2: 247062-247482 bp 3 Locus 3: 455625-455917 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 136541-136767 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 136541-136767 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247062-247482 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 247062-247482 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455625-455917 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455625-455917 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136541-136767 bp]: array | spacers
           [Locus range 247062-247482 bp]: array | spacers
           [Locus range 455625-455917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)