CRISPRone

CRISPRone report for GCA_007114225.1_ASM711422v1

♦ Seq 1: VILV01000005.1 Clostridioides difficile strain Gcol.A87 .cdiff_col_A87.5, whole genome shotgun sequence

⇒Summary: seq-len = 301476 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126611-137888 bp Zoom in on locus 1 x27 CRISPR array Location: 126611-128350 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 126611-128350 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 128534-128800 bp Gene: cd09722:cas1 Type: universal Location: 128803-129783 bp Gene: pfam01930:cas4 Type: Type-I Location: 129786-130304 bp Gene: COG1203:cas3 Type: Type-I Location: 130352-132673 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 132684-133385 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 133387-134301 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 134303-136153 bp Gene: pfam01881:cas6 Type: other Location: 136159-136953 bp Gene: pfam13280:WYL Type: other Location: 136974-137888 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 126611-128350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILV01000007.1 Clostridioides difficile strain Gcol.A87 .cdiff_col_A87.7, whole genome shotgun sequence

⇒Summary: seq-len = 217914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91031-92244 bp Zoom in on locus 1 x19 CRISPR array Location: 91031-92244 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 91031-92244 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91031-92244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILV01000001.1 Clostridioides difficile strain Gcol.A87 .cdiff_col_A87.1, whole genome shotgun sequence

⇒Summary: seq-len = 1267056 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 420849-421010 bp 2 Locus 2: 776706-777461 bp 3 Locus 3: 942981-951318 bp 4 Locus 4: 1024543-1025499 bp Zoom in on locus 1 x3 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x15 CRISPR array Location: 420849-421010 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 420849-421010 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 776706-777461 bp Num of repeats: 12 Spacers: s3-s13 CRISPR array Location: 776706-777461 bp Num of repeats: 12 Spacers: s3-s13 Gene: cd09641:cas3HD Type: Type-I Location: 942981-945389 bp Gene: cd09693:cas5 Type: Type-I Location: 945416-946222 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 946238-947251 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 947270-948736 bp Gene: pfam01881:cas6 Type: other Location: 948741-949478 bp Gene: unk Type: unknown Location: 949579-949755 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 950209-951318 bp CRISPR array Location: 1024543-1025499 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 1024543-1025499 bp Num of repeats: 15 Spacers: s14-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 420849-421010 bp]: array | spacers
           [Locus range 776706-777461 bp]: array | spacers
           [Locus range 1024543-1025499 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VILV01000003.1 Clostridioides difficile strain Gcol.A87 .cdiff_col_A87.3, whole genome shotgun sequence

⇒Summary: seq-len = 421999 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61023-61911 bp 2 Locus 2: 252002-252496 bp 3 Locus 3: 343149-344603 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 Zoom in on locus 3 x7 x7 CRISPR array Location: 61023-61911 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 61023-61911 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 252002-252496 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 252002-252496 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 343149-343576 bp Num of repeats: 7 Spacers: s21-s26 CRISPR array Location: 343149-343576 bp Num of repeats: 7 Spacers: s21-s26 CRISPR array Location: 344179-344603 bp Num of repeats: 7 Spacers: s27-s32 CRISPR array Location: 344179-344603 bp Num of repeats: 7 Spacers: s27-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61023-61911 bp]: array | spacers
           [Locus range 252002-252496 bp]: array | spacers
           [Locus range 343149-343576 bp]: array | spacers
           [Locus range 344179-344603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)