CRISPRone

CRISPRone report for GCA_007114235.1_ASM711423v1

♦ Seq 1: VILW01000002.1 Clostridioides difficile strain Gcol.A86 .cdiff_col_A86.2, whole genome shotgun sequence

⇒Summary: seq-len = 645059 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136048-136274 bp 2 Locus 2: 246569-246989 bp 3 Locus 3: 455132-455424 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 136048-136274 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 136048-136274 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246569-246989 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246569-246989 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455132-455424 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455132-455424 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136048-136274 bp]: array | spacers
           [Locus range 246569-246989 bp]: array | spacers
           [Locus range 455132-455424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILW01000001.1 Clostridioides difficile strain Gcol.A86 .cdiff_col_A86.1, whole genome shotgun sequence

⇒Summary: seq-len = 1179273 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38393-38754 bp 2 Locus 2: 333093-333254 bp 3 Locus 3: 488707-500763 bp 4 Locus 4: 690266-690884 bp 5 Locus 5: 852852-860717 bp 6 Locus 6: 933965-934522 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x10 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38393-38754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38393-38754 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 333093-333254 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 333093-333254 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 488707-488997 bp Gene: cd09722:cas1 Type: universal Location: 489208-490215 bp Gene: pfam01930:cas4 Type: Type-I Location: 490241-490735 bp CRISPR array Location: 490820-493821 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 490820-493821 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 494011-496569 bp Gene: cd09693:cas5 Type: Type-I Location: 496593-497333 bp Gene: pfam05107:cas7b Type: Type-I Location: 497335-498324 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 498317-500056 bp Gene: cd09652:cas6 Type: other Location: 500068-500763 bp CRISPR array Location: 690266-690884 bp Num of repeats: 10 Spacers: s53-s61 CRISPR array Location: 690266-690884 bp Num of repeats: 10 Spacers: s53-s61 Gene: cd09641:cas3HD Type: Type-I Location: 852852-855260 bp Gene: cd09693:cas5 Type: Type-I Location: 855287-856084 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 856100-857113 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 857133-858608 bp Gene: pfam01881:cas6 Type: other Location: 858613-859350 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 859608-860717 bp CRISPR array Location: 933965-934522 bp Num of repeats: 9 Spacers: s62-s69 CRISPR array Location: 933965-934522 bp Num of repeats: 9 Spacers: s62-s69 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38393-38754 bp]: array | spacers
           [Locus range 333093-333254 bp]: array | spacers
           [Locus range 490820-493821 bp]: array | spacers
           [Locus range 690266-690884 bp]: array | spacers
           [Locus range 933965-934522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)