CRISPRone

CRISPRone report for GCA_007114285.1_ASM711428v1

♦ Seq 1: VILY01000003.1 Clostridioides difficile strain Gcol.A83 .cdiff_col_A83.3, whole genome shotgun sequence

⇒Summary: seq-len = 750086 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241075-241301 bp 2 Locus 2: 351596-352016 bp 3 Locus 3: 560159-560451 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 241075-241301 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 241075-241301 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 351596-352016 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 351596-352016 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 560159-560451 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 560159-560451 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241075-241301 bp]: array | spacers
           [Locus range 351596-352016 bp]: array | spacers
           [Locus range 560159-560451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILY01000001.1 Clostridioides difficile strain Gcol.A83 .cdiff_col_A83.1, whole genome shotgun sequence

⇒Summary: seq-len = 1202871 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38400-38761 bp 2 Locus 2: 356622-356783 bp 3 Locus 3: 512238-524229 bp 4 Locus 4: 713732-714482 bp 5 Locus 5: 876450-884315 bp 6 Locus 6: 957563-958120 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x45 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38400-38761 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38400-38761 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356622-356783 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356622-356783 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512238-512528 bp Gene: cd09722:cas1 Type: universal Location: 512739-513746 bp Gene: pfam01930:cas4 Type: Type-I Location: 513772-514266 bp CRISPR array Location: 514351-517287 bp Num of repeats: 45 Spacers: s8-s51 CRISPR array Location: 514351-517287 bp Num of repeats: 45 Spacers: s8-s51 Gene: cd09641:cas3HD Type: Type-I Location: 517477-520035 bp Gene: cd09693:cas5 Type: Type-I Location: 520059-520799 bp Gene: pfam05107:cas7b Type: Type-I Location: 520801-521790 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521783-523522 bp Gene: cd09652:cas6 Type: other Location: 523534-524229 bp CRISPR array Location: 713732-714482 bp Num of repeats: 12 Spacers: s52-s62 CRISPR array Location: 713732-714482 bp Num of repeats: 12 Spacers: s52-s62 Gene: cd09641:cas3HD Type: Type-I Location: 876450-878858 bp Gene: cd09693:cas5 Type: Type-I Location: 878885-879682 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879698-880711 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880731-882206 bp Gene: pfam01881:cas6 Type: other Location: 882211-882948 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 883206-884315 bp CRISPR array Location: 957563-958120 bp Num of repeats: 9 Spacers: s63-s70 CRISPR array Location: 957563-958120 bp Num of repeats: 9 Spacers: s63-s70 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38400-38761 bp]: array | spacers
           [Locus range 356622-356783 bp]: array | spacers
           [Locus range 514351-517287 bp]: array | spacers
           [Locus range 713732-714482 bp]: array | spacers
           [Locus range 957563-958120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)