CRISPRone

CRISPRone report for GCA_007114305.1_ASM711430v1

♦ Seq 1: VILX01000010.1 Clostridioides difficile strain Gcol.A84 .cdiff_col_A84.10, whole genome shotgun sequence

⇒Summary: seq-len = 14439 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8884-9242 bp Zoom in on locus 1 x6 CRISPR array Location: 8884-9242 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8884-9242 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8884-9242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VILX01000004.1 Clostridioides difficile strain Gcol.A84 .cdiff_col_A84.4, whole genome shotgun sequence

⇒Summary: seq-len = 633187 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 384645-384940 bp 2 Locus 2: 495264-496354 bp Zoom in on locus 1 x5 Zoom in on locus 2 x17 CRISPR array Location: 384645-384940 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 384645-384940 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 495264-496354 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 495264-496354 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 384645-384940 bp]: array | spacers
           [Locus range 495264-496354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VILX01000002.1 Clostridioides difficile strain Gcol.A84 .cdiff_col_A84.2, whole genome shotgun sequence

⇒Summary: seq-len = 832070 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 557255-568556 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 557255-558169 bp Gene: pfam01881:cas6 Type: other Location: 558190-558984 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 558990-560867 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 560869-561783 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 561785-562486 bp Gene: COG1203:cas3 Type: Type-I Location: 562497-564818 bp Gene: pfam01930:cas4 Type: Type-I Location: 564833-565384 bp Gene: cd09722:cas1 Type: universal Location: 565387-566367 bp Gene: cd09725:cas2 Type: universal Location: 566370-566636 bp CRISPR array Location: 566820-568556 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 566820-568556 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 566820-568556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VILX01000001.1 Clostridioides difficile strain Gcol.A84 .cdiff_col_A84.1, whole genome shotgun sequence

⇒Summary: seq-len = 1249282 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38391-39477 bp 2 Locus 2: 357348-357507 bp 3 Locus 3: 408420-409826 bp 4 Locus 4: 758966-759980 bp 5 Locus 5: 921958-929823 bp 6 Locus 6: 1003091-1003648 bp Zoom in on locus 1 x17 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38391-39477 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 38391-39477 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 357348-357507 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 357348-357507 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 408420-409826 bp Num of repeats: 22 Spacers: s19-s39 CRISPR array Location: 408420-409826 bp Num of repeats: 22 Spacers: s19-s39 CRISPR array Location: 758966-759980 bp Num of repeats: 16 Spacers: s40-s54 CRISPR array Location: 758966-759980 bp Num of repeats: 16 Spacers: s40-s54 Gene: cd09641:cas3HD Type: Type-I Location: 921958-924366 bp Gene: cd09693:cas5 Type: Type-I Location: 924393-925190 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 925206-926219 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 926239-927714 bp Gene: pfam01881:cas6 Type: other Location: 927719-928456 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 928714-929823 bp CRISPR array Location: 1003091-1003648 bp Num of repeats: 9 Spacers: s55-s62 CRISPR array Location: 1003091-1003648 bp Num of repeats: 9 Spacers: s55-s62 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38391-39477 bp]: array | spacers
           [Locus range 357348-357507 bp]: array | spacers
           [Locus range 408420-409826 bp]: array | spacers
           [Locus range 758966-759980 bp]: array | spacers
           [Locus range 1003091-1003648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)