CRISPRone

CRISPRone report for GCA_007114335.1_ASM711433v1

♦ Seq 1: VIMB01000016.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.16, whole genome shotgun sequence

⇒Summary: seq-len = 18466 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2623-7553 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 2623-3508 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2623-3508 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5302-5525 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 5302-5525 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 7130-7553 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 7130-7553 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2623-3508 bp]: array | spacers
           [Locus range 5302-5525 bp]: array | spacers
           [Locus range 7130-7553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMB01000003.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.3, whole genome shotgun sequence

⇒Summary: seq-len = 573731 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244865-245223 bp 2 Locus 2: 318505-326826 bp 3 Locus 3: 490098-490715 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 244865-245223 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244865-245223 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318505-319614 bp Gene: unk Type: unknown Location: 320048-320224 bp Gene: pfam01881:cas6 Type: other Location: 320325-321062 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321067-322542 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322562-323578 bp Gene: cd09693:cas5 Type: Type-I Location: 323594-324391 bp Gene: cd09641:cas3HD Type: Type-I Location: 324418-326826 bp CRISPR array Location: 490098-490715 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490098-490715 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244865-245223 bp]: array | spacers
           [Locus range 490098-490715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMB01000004.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.4, whole genome shotgun sequence

⇒Summary: seq-len = 418713 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91981-92473 bp 2 Locus 2: 281813-282962 bp Zoom in on locus 1 x8 Zoom in on locus 2 x18 CRISPR array Location: 91981-92473 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91981-92473 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 281813-282962 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 281813-282962 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91981-92473 bp]: array | spacers
           [Locus range 281813-282962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMB01000005.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.5, whole genome shotgun sequence

⇒Summary: seq-len = 402303 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110358-110518 bp Zoom in on locus 1 x3 CRISPR array Location: 110358-110518 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110358-110518 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110358-110518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMB01000021.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.21, whole genome shotgun sequence

⇒Summary: seq-len = 6031 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 293-3208 bp Zoom in on locus 1 x15 x5 CRISPR array Location: 293-1264 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 293-1264 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2916-3208 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 2916-3208 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 293-1264 bp]: array | spacers
           [Locus range 2916-3208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMB01000001.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.1, whole genome shotgun sequence

⇒Summary: seq-len = 738407 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251957-252051 bp 2 Locus 2: 474483-485594 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 251957-252051 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 251957-252051 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 474483-475370 bp Gene: pfam01881:cas6 Type: other Location: 475448-476185 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 476191-478041 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 478043-478957 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 478959-479660 bp Gene: COG1203:cas3 Type: Type-I Location: 479671-481992 bp Gene: pfam01930:cas4 Type: Type-I Location: 482007-482558 bp Gene: cd09722:cas1 Type: universal Location: 482561-483541 bp Gene: cd09725:cas2 Type: universal Location: 483544-483810 bp CRISPR array Location: 483994-485594 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 483994-485594 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 251957-252051 bp]: array | spacers
           [Locus range 483994-485594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VIMB01000012.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.12, whole genome shotgun sequence

⇒Summary: seq-len = 97012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78040-78530 bp Zoom in on locus 1 x8 CRISPR array Location: 78040-78530 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 78040-78530 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78040-78530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VIMB01000006.1 Clostridioides difficile strain Gcol.A80 .cdiff_col_A80.6, whole genome shotgun sequence

⇒Summary: seq-len = 235855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148578-149727 bp Zoom in on locus 1 x18 CRISPR array Location: 148578-149727 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 148578-149727 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148578-149727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)