CRISPRone

CRISPRone report for GCA_007114385.1_ASM711438v1

♦ Seq 1: VIMC01000004.1 Clostridioides difficile strain Gcol.A74 .cdiff_col_A74.4, whole genome shotgun sequence

⇒Summary: seq-len = 632068 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137171-137397 bp 2 Locus 2: 247692-248112 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 137171-137397 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 137171-137397 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247692-248112 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 247692-248112 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137171-137397 bp]: array | spacers
           [Locus range 247692-248112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMC01000001.1 Clostridioides difficile strain Gcol.A74 .cdiff_col_A74.1, whole genome shotgun sequence

⇒Summary: seq-len = 1202920 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38390-38751 bp 2 Locus 2: 356576-356737 bp 3 Locus 3: 512192-524248 bp 4 Locus 4: 713751-714501 bp 5 Locus 5: 876469-884334 bp 6 Locus 6: 957582-958139 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38390-38751 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38390-38751 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356576-356737 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356576-356737 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512192-512482 bp Gene: cd09722:cas1 Type: universal Location: 512693-513700 bp Gene: pfam01930:cas4 Type: Type-I Location: 513726-514220 bp CRISPR array Location: 514305-517306 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 514305-517306 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 517496-520054 bp Gene: cd09693:cas5 Type: Type-I Location: 520078-520818 bp Gene: pfam05107:cas7b Type: Type-I Location: 520820-521809 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521802-523541 bp Gene: cd09652:cas6 Type: other Location: 523553-524248 bp CRISPR array Location: 713751-714501 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 713751-714501 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 876469-878877 bp Gene: cd09693:cas5 Type: Type-I Location: 878904-879701 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879717-880730 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880750-882225 bp Gene: pfam01881:cas6 Type: other Location: 882230-882967 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 883225-884334 bp CRISPR array Location: 957582-958139 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 957582-958139 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38390-38751 bp]: array | spacers
           [Locus range 356576-356737 bp]: array | spacers
           [Locus range 514305-517306 bp]: array | spacers
           [Locus range 713751-714501 bp]: array | spacers
           [Locus range 957582-958139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)