CRISPRone

CRISPRone report for GCA_007114395.1_ASM711439v1

♦ Seq 1: VIMD01000001.1 Clostridioides difficile strain Gcol.A73 .cdiff_col_A73.1, whole genome shotgun sequence

⇒Summary: seq-len = 1196960 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245623-246181 bp 2 Locus 2: 319472-327337 bp 3 Locus 3: 489918-490868 bp 4 Locus 4: 787148-788622 bp 5 Locus 5: 1157412-1158561 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x15 Zoom in on locus 4 x23 Zoom in on locus 5 x18 CRISPR array Location: 245623-246181 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 245623-246181 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319472-320581 bp Gene: pfam01881:cas6 Type: other Location: 320839-321576 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321581-323056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323076-324089 bp Gene: cd09693:cas5 Type: Type-I Location: 324105-324902 bp Gene: cd09641:cas3HD Type: Type-I Location: 324929-327337 bp CRISPR array Location: 489918-490868 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 489918-490868 bp Num of repeats: 15 Spacers: s9-s22 CRISPR array Location: 787148-788622 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 787148-788622 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 1157412-1158561 bp Num of repeats: 18 Spacers: s45-s61 CRISPR array Location: 1157412-1158561 bp Num of repeats: 18 Spacers: s45-s61 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245623-246181 bp]: array | spacers
           [Locus range 489918-490868 bp]: array | spacers
           [Locus range 787148-788622 bp]: array | spacers
           [Locus range 1157412-1158561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMD01000004.1 Clostridioides difficile strain Gcol.A73 .cdiff_col_A73.4, whole genome shotgun sequence

⇒Summary: seq-len = 691024 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101571-103419 bp 2 Locus 2: 196122-196283 bp 3 Locus 3: 306581-307067 bp Zoom in on locus 1 x9 x9 Zoom in on locus 2 x3 Zoom in on locus 3 x8 CRISPR array Location: 101571-102125 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 101571-102125 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102862-103419 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 102862-103419 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 196122-196283 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 196122-196283 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 306581-307067 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 306581-307067 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101571-102125 bp]: array | spacers
           [Locus range 102862-103419 bp]: array | spacers
           [Locus range 196122-196283 bp]: array | spacers
           [Locus range 306581-307067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMD01000002.1 Clostridioides difficile strain Gcol.A73 .cdiff_col_A73.2, whole genome shotgun sequence

⇒Summary: seq-len = 842380 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254121-264825 bp Zoom in on locus 1 x18 CRISPR array Location: 254121-255260 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 254121-255260 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 255444-255710 bp Gene: cd09722:cas1 Type: universal Location: 255713-256693 bp Gene: pfam01930:cas4 Type: Type-I Location: 256696-257214 bp Gene: COG1203:cas3 Type: Type-I Location: 257262-259583 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259594-260295 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260297-261211 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261213-263090 bp Gene: pfam01881:cas6 Type: other Location: 263096-263833 bp Gene: pfam13280:WYL Type: other Location: 263911-264825 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254121-255260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)