CRISPRone

CRISPRone report for GCA_007114405.1_ASM711440v1

♦ Seq 1: VIME01000002.1 Clostridioides difficile strain Gcol.A72 .cdiff_col_A72.2, whole genome shotgun sequence

⇒Summary: seq-len = 842374 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254115-264819 bp Zoom in on locus 1 x18 CRISPR array Location: 254115-255254 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 254115-255254 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 255438-255704 bp Gene: cd09722:cas1 Type: universal Location: 255707-256687 bp Gene: pfam01930:cas4 Type: Type-I Location: 256690-257208 bp Gene: COG1203:cas3 Type: Type-I Location: 257256-259577 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259588-260289 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260291-261205 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261207-263084 bp Gene: pfam01881:cas6 Type: other Location: 263090-263827 bp Gene: pfam13280:WYL Type: other Location: 263905-264819 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254115-255254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIME01000003.1 Clostridioides difficile strain Gcol.A72 .cdiff_col_A72.3, whole genome shotgun sequence

⇒Summary: seq-len = 798471 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209018-210866 bp 2 Locus 2: 303569-303730 bp 3 Locus 3: 414028-414514 bp Zoom in on locus 1 x9 x9 Zoom in on locus 2 x3 Zoom in on locus 3 x8 CRISPR array Location: 209018-209572 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 209018-209572 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 210309-210866 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 210309-210866 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 303569-303730 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 303569-303730 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 414028-414514 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 414028-414514 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 209018-209572 bp]: array | spacers
           [Locus range 210309-210866 bp]: array | spacers
           [Locus range 303569-303730 bp]: array | spacers
           [Locus range 414028-414514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIME01000001.1 Clostridioides difficile strain Gcol.A72 .cdiff_col_A72.1, whole genome shotgun sequence

⇒Summary: seq-len = 1196106 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38406-39556 bp 2 Locus 2: 408346-409819 bp 3 Locus 3: 706100-707049 bp 4 Locus 4: 869630-877495 bp 5 Locus 5: 950787-951344 bp Zoom in on locus 1 x18 Zoom in on locus 2 x23 Zoom in on locus 3 x15 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 38406-39556 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38406-39556 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 408346-409819 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 408346-409819 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 706100-707049 bp Num of repeats: 15 Spacers: s40-s53 CRISPR array Location: 706100-707049 bp Num of repeats: 15 Spacers: s40-s53 Gene: cd09641:cas3HD Type: Type-I Location: 869630-872038 bp Gene: cd09693:cas5 Type: Type-I Location: 872065-872862 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 872878-873891 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 873911-875386 bp Gene: pfam01881:cas6 Type: other Location: 875391-876128 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 876386-877495 bp CRISPR array Location: 950787-951344 bp Num of repeats: 9 Spacers: s54-s61 CRISPR array Location: 950787-951344 bp Num of repeats: 9 Spacers: s54-s61 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38406-39556 bp]: array | spacers
           [Locus range 408346-409819 bp]: array | spacers
           [Locus range 706100-707049 bp]: array | spacers
           [Locus range 950787-951344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)