CRISPRone

CRISPRone report for GCA_007114415.1_ASM711441v1

♦ Seq 1: VIMF01000004.1 Clostridioides difficile strain Gcol.A71 .cdiff_col_A71.4, whole genome shotgun sequence

⇒Summary: seq-len = 690073 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100620-102468 bp 2 Locus 2: 195171-195332 bp 3 Locus 3: 305630-306116 bp Zoom in on locus 1 x9 x9 Zoom in on locus 2 x3 Zoom in on locus 3 x8 CRISPR array Location: 100620-101174 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 100620-101174 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 101911-102468 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 101911-102468 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 195171-195332 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 195171-195332 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 305630-306116 bp Num of repeats: 8 Spacers: s19-s25 CRISPR array Location: 305630-306116 bp Num of repeats: 8 Spacers: s19-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100620-101174 bp]: array | spacers
           [Locus range 101911-102468 bp]: array | spacers
           [Locus range 195171-195332 bp]: array | spacers
           [Locus range 305630-306116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMF01000001.1 Clostridioides difficile strain Gcol.A71 .cdiff_col_A71.1, whole genome shotgun sequence

⇒Summary: seq-len = 1196131 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38401-39551 bp 2 Locus 2: 408341-409814 bp 3 Locus 3: 706095-707044 bp 4 Locus 4: 869625-877490 bp 5 Locus 5: 950782-951339 bp Zoom in on locus 1 x18 Zoom in on locus 2 x23 Zoom in on locus 3 x15 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 38401-39551 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38401-39551 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 408341-409814 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 408341-409814 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 706095-707044 bp Num of repeats: 15 Spacers: s40-s53 CRISPR array Location: 706095-707044 bp Num of repeats: 15 Spacers: s40-s53 Gene: cd09641:cas3HD Type: Type-I Location: 869625-872033 bp Gene: cd09693:cas5 Type: Type-I Location: 872060-872857 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 872873-873886 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 873906-875381 bp Gene: pfam01881:cas6 Type: other Location: 875386-876123 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 876381-877490 bp CRISPR array Location: 950782-951339 bp Num of repeats: 9 Spacers: s54-s61 CRISPR array Location: 950782-951339 bp Num of repeats: 9 Spacers: s54-s61 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38401-39551 bp]: array | spacers
           [Locus range 408341-409814 bp]: array | spacers
           [Locus range 706095-707044 bp]: array | spacers
           [Locus range 950782-951339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMF01000002.1 Clostridioides difficile strain Gcol.A71 .cdiff_col_A71.2, whole genome shotgun sequence

⇒Summary: seq-len = 842419 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 577556-588261 bp Zoom in on locus 1 x18 Gene: pfam13280:WYL Type: other Location: 577556-578470 bp Gene: pfam01881:cas6 Type: other Location: 578548-579285 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 579291-581168 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 581170-582084 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 582086-582787 bp Gene: COG1203:cas3 Type: Type-I Location: 582798-585119 bp Gene: pfam01930:cas4 Type: Type-I Location: 585134-585685 bp Gene: cd09722:cas1 Type: universal Location: 585688-586668 bp Gene: cd09725:cas2 Type: universal Location: 586671-586937 bp CRISPR array Location: 587121-588261 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 587121-588261 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 587121-588261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)