CRISPRone

CRISPRone report for GCA_007114495.1_ASM711449v1

♦ Seq 1: VIMI01000008.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.8, whole genome shotgun sequence

⇒Summary: seq-len = 151634 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30796-31090 bp 2 Locus 2: 125127-127638 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30796-31090 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30796-31090 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 125127-125484 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125127-125484 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 127348-127638 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 127348-127638 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30796-31090 bp]: array | spacers
           [Locus range 125127-125484 bp]: array | spacers
           [Locus range 127348-127638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMI01000003.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.3, whole genome shotgun sequence

⇒Summary: seq-len = 301586 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 184490-191022 bp Zoom in on locus 1 x10 CRISPR array Location: 184490-185112 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 184490-185112 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 185365-187350 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187361-188431 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 188452-189618 bp Gene: pfam01881:cas6 Type: other Location: 189620-190384 bp Gene: cd09693:cas5 Type: Type-I Location: 190375-191022 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 184490-185112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMI01000004.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.4, whole genome shotgun sequence

⇒Summary: seq-len = 290543 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3488 bp 2 Locus 2: 79436-80122 bp 3 Locus 3: 288511-289464 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 3-593 bp Gene: COG2378:WYL Type: other Location: 1232-2143 bp Gene: unk Type: unknown Location: 2254-2721 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2889-3488 bp CRISPR array Location: 79436-80122 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 79436-80122 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 288511-289464 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 288511-289464 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79436-80122 bp]: array | spacers
           [Locus range 288511-289464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMI01000001.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.1, whole genome shotgun sequence

⇒Summary: seq-len = 766303 bp; # of CRISPR array = 3; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52620-56210 bp 2 Locus 2: 115430-116515 bp 3 Locus 3: 424292-424386 bp 4 Locus 4: 466007-466632 bp Zoom in on locus 1 Zoom in on locus 2 x17 Zoom in on locus 3 x2 Zoom in on locus 4 x10 Gene: cas14:cas14 Type: Type-V Location: 52620-53375 bp Gene: cas14:cas14 Type: Type-V Location: 53354-53737 bp Gene: unk Type: unknown Location: 54122-55666 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 55842-56210 bp CRISPR array Location: 115430-116515 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 115430-116515 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 424292-424386 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 424292-424386 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 466007-466632 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 466007-466632 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 115430-116515 bp]: array | spacers
           [Locus range 424292-424386 bp]: array | spacers
           [Locus range 466007-466632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMI01000002.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.2, whole genome shotgun sequence

⇒Summary: seq-len = 367137 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313873-321748 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313873-314982 bp Gene: pfam01881:cas6 Type: other Location: 315241-315978 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315983-317458 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317478-318491 bp Gene: cd09693:cas5 Type: Type-I Location: 318507-319313 bp Gene: cd09641:cas3HD Type: Type-I Location: 319340-321748 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMI01000011.1 Clostridioides difficile strain Gcol.A68 .cdiff_col_A68.11, whole genome shotgun sequence

⇒Summary: seq-len = 141406 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16597-26773 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 16597-17484 bp Gene: pfam01881:cas6 Type: other Location: 17562-18299 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18305-20182 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20184-21098 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21100-21801 bp Gene: COG1203:cas3 Type: Type-I Location: 21812-24133 bp Gene: pfam01930:cas4 Type: Type-I Location: 24148-24699 bp Gene: cd09722:cas1 Type: universal Location: 24702-25682 bp Gene: cd09725:cas2 Type: universal Location: 25685-25951 bp CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 Gene: unk Type: unknown Location: 26151-26318 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26540-26773 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26135-27620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)