CRISPRone

CRISPRone report for GCA_007114535.1_ASM711453v1

♦ Seq 1: VIMH01000004.1 Clostridioides difficile strain Gcol.A69 .cdiff_col_A69.4, whole genome shotgun sequence

⇒Summary: seq-len = 290402 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1080-2034 bp 2 Locus 2: 210422-211109 bp 3 Locus 3: 287056-290400 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 CRISPR array Location: 1080-2034 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1080-2034 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210422-211109 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210422-211109 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 287056-287655 bp Gene: unk Type: unknown Location: 287823-288290 bp Gene: COG2378:WYL Type: other Location: 288395-289312 bp Gene: cas14:cas14 Type: Type-V Location: 289951-290400 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1080-2034 bp]: array | spacers
           [Locus range 210422-211109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMH01000002.1 Clostridioides difficile strain Gcol.A69 .cdiff_col_A69.2, whole genome shotgun sequence

⇒Summary: seq-len = 481506 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291190-297723 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 291190-291837 bp Gene: pfam01881:cas6 Type: other Location: 291828-292592 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 292594-293760 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 293781-294851 bp Gene: COG1203:cas3 Type: Type-I Location: 294862-296847 bp CRISPR array Location: 297100-297723 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 297100-297723 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 297100-297723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMH01000009.1 Clostridioides difficile strain Gcol.A69 .cdiff_col_A69.9, whole genome shotgun sequence

⇒Summary: seq-len = 141406 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16597-26773 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 16597-17484 bp Gene: pfam01881:cas6 Type: other Location: 17562-18299 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18305-20182 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20184-21098 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21100-21801 bp Gene: COG1203:cas3 Type: Type-I Location: 21812-24133 bp Gene: pfam01930:cas4 Type: Type-I Location: 24148-24699 bp Gene: cd09722:cas1 Type: universal Location: 24702-25682 bp Gene: cd09725:cas2 Type: universal Location: 25685-25951 bp CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 Gene: unk Type: unknown Location: 26151-26318 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26540-26773 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26135-27620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMH01000003.1 Clostridioides difficile strain Gcol.A69 .cdiff_col_A69.3, whole genome shotgun sequence

⇒Summary: seq-len = 367138 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313873-321748 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313873-314982 bp Gene: pfam01881:cas6 Type: other Location: 315241-315978 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315983-317458 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317478-318491 bp Gene: cd09693:cas5 Type: Type-I Location: 318507-319313 bp Gene: cd09641:cas3HD Type: Type-I Location: 319340-321748 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMH01000001.1 Clostridioides difficile strain Gcol.A69 .cdiff_col_A69.1, whole genome shotgun sequence

⇒Summary: seq-len = 916377 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31385-31679 bp 2 Locus 2: 125716-128227 bp 3 Locus 3: 265504-266589 bp 4 Locus 4: 574366-574460 bp 5 Locus 5: 616081-616706 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x2 Zoom in on locus 5 x10 CRISPR array Location: 31385-31679 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31385-31679 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 125716-126073 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125716-126073 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 127937-128227 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 127937-128227 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 265504-266589 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 265504-266589 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 574366-574460 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 574366-574460 bp Num of repeats: 2 Spacers: s30-s30 CRISPR array Location: 616081-616706 bp Num of repeats: 10 Spacers: s31-s39 CRISPR array Location: 616081-616706 bp Num of repeats: 10 Spacers: s31-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31385-31679 bp]: array | spacers
           [Locus range 125716-126073 bp]: array | spacers
           [Locus range 127937-128227 bp]: array | spacers
           [Locus range 265504-266589 bp]: array | spacers
           [Locus range 574366-574460 bp]: array | spacers
           [Locus range 616081-616706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)