CRISPRone

CRISPRone report for GCA_007114555.1_ASM711455v1

♦ Seq 1: VIMJ01000012.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.12, whole genome shotgun sequence

⇒Summary: seq-len = 141063 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16597-26773 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 16597-17484 bp Gene: pfam01881:cas6 Type: other Location: 17562-18299 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18305-20182 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20184-21098 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21100-21801 bp Gene: COG1203:cas3 Type: Type-I Location: 21812-24133 bp Gene: pfam01930:cas4 Type: Type-I Location: 24148-24699 bp Gene: cd09722:cas1 Type: universal Location: 24702-25682 bp Gene: cd09725:cas2 Type: universal Location: 25685-25951 bp CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 26135-27620 bp Num of repeats: 23 Spacers: s1-s22 Gene: unk Type: unknown Location: 26151-26318 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26540-26773 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26135-27620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMJ01000003.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.3, whole genome shotgun sequence

⇒Summary: seq-len = 290328 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3273 bp 2 Locus 2: 79221-79907 bp 3 Locus 3: 288296-289249 bp Zoom in on locus 1 Zoom in on locus 2 x11 Zoom in on locus 3 x15 Gene: cas14:cas14 Type: Type-V Location: 1-378 bp Gene: COG2378:WYL Type: other Location: 1017-1928 bp Gene: unk Type: unknown Location: 2039-2506 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2674-3273 bp CRISPR array Location: 79221-79907 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 79221-79907 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 288296-289249 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 288296-289249 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79221-79907 bp]: array | spacers
           [Locus range 288296-289249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMJ01000002.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.2, whole genome shotgun sequence

⇒Summary: seq-len = 310658 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50971-53833 bp 2 Locus 2: 113053-114138 bp Zoom in on locus 1 Zoom in on locus 2 x17 Gene: cas14:cas14 Type: Type-V Location: 50971-51462 bp Gene: unk Type: unknown Location: 51745-53289 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53465-53833 bp CRISPR array Location: 113053-114138 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 113053-114138 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113053-114138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMJ01000007.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.7, whole genome shotgun sequence

⇒Summary: seq-len = 187209 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70113-76645 bp Zoom in on locus 1 x10 CRISPR array Location: 70113-70735 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 70113-70735 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70988-72973 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72984-74054 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 74075-75241 bp Gene: pfam01881:cas6 Type: other Location: 75243-76007 bp Gene: cd09693:cas5 Type: Type-I Location: 75998-76645 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70113-70735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMJ01000009.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.9, whole genome shotgun sequence

⇒Summary: seq-len = 152812 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23871-26381 bp 2 Locus 2: 120419-120712 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23871-24160 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23871-24160 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 26025-26381 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 26025-26381 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 120419-120712 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 120419-120712 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23871-24160 bp]: array | spacers
           [Locus range 26025-26381 bp]: array | spacers
           [Locus range 120419-120712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMJ01000005.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.5, whole genome shotgun sequence

⇒Summary: seq-len = 236863 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45388-53263 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45388-47796 bp Gene: cd09693:cas5 Type: Type-I Location: 47823-48629 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48645-49658 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49678-51153 bp Gene: pfam01881:cas6 Type: other Location: 51158-51895 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52154-53263 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VIMJ01000001.1 Clostridioides difficile strain Gcol.A67 .cdiff_col_A67.1, whole genome shotgun sequence

⇒Summary: seq-len = 453789 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299672-300298 bp 2 Locus 2: 341918-342013 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299672-300298 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299672-300298 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341918-342013 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341918-342013 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299672-300298 bp]: array | spacers
           [Locus range 341918-342013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)