CRISPRone

CRISPRone report for GCA_007114585.1_ASM711458v1

♦ Seq 1: VIMM01000008.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.8, whole genome shotgun sequence

⇒Summary: seq-len = 181438 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148491-149181 bp Zoom in on locus 1 x11 CRISPR array Location: 148491-149181 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 148491-149181 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148491-149181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMM01000005.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.5, whole genome shotgun sequence

⇒Summary: seq-len = 207798 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135056-142925 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135056-137464 bp Gene: cd09693:cas5 Type: Type-I Location: 137491-138297 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 138313-139329 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 139349-140815 bp Gene: pfam01881:cas6 Type: other Location: 140820-141557 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 141816-142925 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMM01000003.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.3, whole genome shotgun sequence

⇒Summary: seq-len = 267098 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192672-203666 bp Zoom in on locus 1 x30 Gene: cd09652:cas6 Type: other Location: 192672-193367 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 193379-195118 bp Gene: pfam05107:cas7b Type: Type-I Location: 195111-196100 bp Gene: cd09693:cas5 Type: Type-I Location: 196102-196842 bp Gene: cd09641:cas3HD Type: Type-I Location: 196866-199424 bp CRISPR array Location: 199614-201554 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 199614-201554 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam01930:cas4 Type: Type-I Location: 201638-202132 bp Gene: cd09722:cas1 Type: universal Location: 202158-203165 bp Gene: cd09725:cas2 Type: universal Location: 203376-203666 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 199614-201554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMM01000006.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.6, whole genome shotgun sequence

⇒Summary: seq-len = 199252 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45087-45446 bp 2 Locus 2: 88997-89224 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 45087-45446 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45087-45446 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 88997-89224 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 88997-89224 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45087-45446 bp]: array | spacers
           [Locus range 88997-89224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMM01000001.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.1, whole genome shotgun sequence

⇒Summary: seq-len = 631205 bp; # of CRISPR array = 4; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191204-192161 bp 2 Locus 2: 400413-401100 bp 3 Locus 3: 479035-482804 bp 4 Locus 4: 513754-514509 bp 5 Locus 5: 607611-607903 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x12 Zoom in on locus 5 x5 CRISPR array Location: 191204-192161 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 191204-192161 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 400413-401100 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 400413-401100 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 479035-479634 bp Gene: unk Type: unknown Location: 479804-480271 bp Gene: COG2378:WYL Type: other Location: 480382-481293 bp Gene: cas14:cas14 Type: Type-V Location: 481932-482804 bp CRISPR array Location: 513754-514509 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 513754-514509 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 607611-607903 bp Num of repeats: 5 Spacers: s36-s39 CRISPR array Location: 607611-607903 bp Num of repeats: 5 Spacers: s36-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 191204-192161 bp]: array | spacers
           [Locus range 400413-401100 bp]: array | spacers
           [Locus range 513754-514509 bp]: array | spacers
           [Locus range 607611-607903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMM01000012.1 Clostridioides difficile strain Gcol.A64 .cdiff_col_A64.12, whole genome shotgun sequence

⇒Summary: seq-len = 134457 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108431-119343 bp Zoom in on locus 1 x21 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 109962-110228 bp Gene: cd09722:cas1 Type: universal Location: 110231-111211 bp Gene: pfam01930:cas4 Type: Type-I Location: 111214-111732 bp Gene: COG1203:cas3 Type: Type-I Location: 111780-114101 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 114112-114813 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 114815-115729 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 115731-117608 bp Gene: pfam01881:cas6 Type: other Location: 117614-118408 bp Gene: pfam13280:WYL Type: other Location: 118429-119343 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108431-109778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)