CRISPRone

CRISPRone report for GCA_007114595.1_ASM711459v1

♦ Seq 1: VIMO01000003.1 Clostridioides difficile strain Gcol.A55 .cdiff_col_A55.3, whole genome shotgun sequence

⇒Summary: seq-len = 449517 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71040-78322 bp Zoom in on locus 1 x17 CRISPR array Location: 71040-72119 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 71040-72119 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 72686-74668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 74679-75749 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 75770-76918 bp Gene: pfam01881:cas6 Type: other Location: 76920-77684 bp Gene: cd09693:cas5 Type: Type-I Location: 77675-78322 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71040-72119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMO01000002.1 Clostridioides difficile strain Gcol.A55 .cdiff_col_A55.2, whole genome shotgun sequence

⇒Summary: seq-len = 494531 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91339-91694 bp 2 Locus 2: 297298-297917 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 91339-91694 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91339-91694 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 297298-297917 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 297298-297917 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91339-91694 bp]: array | spacers
           [Locus range 297298-297917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMO01000004.1 Clostridioides difficile strain Gcol.A55 .cdiff_col_A55.4, whole genome shotgun sequence

⇒Summary: seq-len = 399689 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256096-267304 bp Zoom in on locus 1 x26 CRISPR array Location: 256096-257766 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 256096-257766 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257950-258216 bp Gene: cd09722:cas1 Type: universal Location: 258219-259199 bp Gene: pfam01930:cas4 Type: Type-I Location: 259202-259720 bp Gene: COG1203:cas3 Type: Type-I Location: 259768-262089 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262100-262801 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262803-263717 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263719-265569 bp Gene: pfam01881:cas6 Type: other Location: 265575-266369 bp Gene: pfam13280:WYL Type: other Location: 266390-267304 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256096-257766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMO01000001.1 Clostridioides difficile strain Gcol.A55 .cdiff_col_A55.1, whole genome shotgun sequence

⇒Summary: seq-len = 1388416 bp; # of CRISPR array = 9; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 212868-213227 bp 2 Locus 2: 293179-301044 bp 3 Locus 3: 466482-467564 bp 4 Locus 4: 763900-765310 bp 5 Locus 5: 810980-811206 bp 6 Locus 6: 1126755-1128493 bp 7 Locus 7: 1274619-1279220 bp 8 Locus 8: 1369487-1370044 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x17 Zoom in on locus 4 x22 Zoom in on locus 5 x4 Zoom in on locus 6 x27 Zoom in on locus 7 x9 x4 x7 Zoom in on locus 8 x9 CRISPR array Location: 212868-213227 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 212868-213227 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 293179-294288 bp Gene: pfam01881:cas6 Type: other Location: 294546-295283 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 295288-296763 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 296783-297796 bp Gene: cd09693:cas5 Type: Type-I Location: 297812-298609 bp Gene: cd09641:cas3HD Type: Type-I Location: 298636-301044 bp CRISPR array Location: 466482-467564 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 466482-467564 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 763900-765310 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 763900-765310 bp Num of repeats: 22 Spacers: s22-s42 CRISPR array Location: 810980-811206 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 810980-811206 bp Num of repeats: 4 Spacers: s43-s45 CRISPR array Location: 1126755-1128493 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1126755-1128493 bp Num of repeats: 27 Spacers: s46-s71 CRISPR array Location: 1274619-1275175 bp Num of repeats: 9 Spacers: s72-s79 CRISPR array Location: 1274619-1275175 bp Num of repeats: 9 Spacers: s72-s79 CRISPR array Location: 1276969-1277192 bp Num of repeats: 4 Spacers: s80-s82 CRISPR array Location: 1276969-1277192 bp Num of repeats: 4 Spacers: s80-s82 CRISPR array Location: 1278797-1279220 bp Num of repeats: 7 Spacers: s83-s88 CRISPR array Location: 1278797-1279220 bp Num of repeats: 7 Spacers: s83-s88 CRISPR array Location: 1369487-1370044 bp Num of repeats: 9 Spacers: s89-s96 CRISPR array Location: 1369487-1370044 bp Num of repeats: 9 Spacers: s89-s96 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 212868-213227 bp]: array | spacers
           [Locus range 466482-467564 bp]: array | spacers
           [Locus range 763900-765310 bp]: array | spacers
           [Locus range 810980-811206 bp]: array | spacers
           [Locus range 1126755-1128493 bp]: array | spacers
           [Locus range 1274619-1275175 bp]: array | spacers
           [Locus range 1276969-1277192 bp]: array | spacers
           [Locus range 1278797-1279220 bp]: array | spacers
           [Locus range 1369487-1370044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)