CRISPRone

CRISPRone report for GCA_007114645.1_ASM711464v1

♦ Seq 1: VIMP01000002.1 Clostridioides difficile strain Gcol.A54 .cdiff_col_A54.2, whole genome shotgun sequence

⇒Summary: seq-len = 494704 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91339-91694 bp 2 Locus 2: 297298-297917 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 91339-91694 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91339-91694 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 297298-297917 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 297298-297917 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91339-91694 bp]: array | spacers
           [Locus range 297298-297917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMP01000004.1 Clostridioides difficile strain Gcol.A54 .cdiff_col_A54.4, whole genome shotgun sequence

⇒Summary: seq-len = 399659 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256066-267274 bp Zoom in on locus 1 x26 CRISPR array Location: 256066-257736 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 256066-257736 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257920-258186 bp Gene: cd09722:cas1 Type: universal Location: 258189-259169 bp Gene: pfam01930:cas4 Type: Type-I Location: 259172-259690 bp Gene: COG1203:cas3 Type: Type-I Location: 259738-262059 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262070-262771 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262773-263687 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263689-265539 bp Gene: pfam01881:cas6 Type: other Location: 265545-266339 bp Gene: pfam13280:WYL Type: other Location: 266360-267274 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256066-257736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMP01000001.1 Clostridioides difficile strain Gcol.A54 .cdiff_col_A54.1, whole genome shotgun sequence

⇒Summary: seq-len = 1388380 bp; # of CRISPR array = 9; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18329-18887 bp 2 Locus 2: 109153-113755 bp 3 Locus 3: 260620-262359 bp 4 Locus 4: 577202-577427 bp 5 Locus 5: 623098-624507 bp 6 Locus 6: 920844-921925 bp 7 Locus 7: 1087363-1095228 bp 8 Locus 8: 1175181-1175539 bp Zoom in on locus 1 x9 Zoom in on locus 2 x7 x4 x9 Zoom in on locus 3 x27 Zoom in on locus 4 x4 Zoom in on locus 5 x22 Zoom in on locus 6 x17 Zoom in on locus 7 Zoom in on locus 8 x6 CRISPR array Location: 18329-18887 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18329-18887 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 109153-109577 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 109153-109577 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 111181-111405 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 111181-111405 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 113198-113755 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 113198-113755 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 260620-262359 bp Num of repeats: 27 Spacers: s26-s51 CRISPR array Location: 260620-262359 bp Num of repeats: 27 Spacers: s26-s51 CRISPR array Location: 577202-577427 bp Num of repeats: 4 Spacers: s52-s54 CRISPR array Location: 577202-577427 bp Num of repeats: 4 Spacers: s52-s54 CRISPR array Location: 623098-624507 bp Num of repeats: 22 Spacers: s55-s75 CRISPR array Location: 623098-624507 bp Num of repeats: 22 Spacers: s55-s75 CRISPR array Location: 920844-921925 bp Num of repeats: 17 Spacers: s76-s91 CRISPR array Location: 920844-921925 bp Num of repeats: 17 Spacers: s76-s91 Gene: cd09641:cas3HD Type: Type-I Location: 1087363-1089771 bp Gene: cd09693:cas5 Type: Type-I Location: 1089798-1090595 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1090611-1091624 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1091644-1093119 bp Gene: pfam01881:cas6 Type: other Location: 1093124-1093861 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1094119-1095228 bp CRISPR array Location: 1175181-1175539 bp Num of repeats: 6 Spacers: s92-s96 CRISPR array Location: 1175181-1175539 bp Num of repeats: 6 Spacers: s92-s96 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18329-18887 bp]: array | spacers
           [Locus range 109153-109577 bp]: array | spacers
           [Locus range 111181-111405 bp]: array | spacers
           [Locus range 113198-113755 bp]: array | spacers
           [Locus range 260620-262359 bp]: array | spacers
           [Locus range 577202-577427 bp]: array | spacers
           [Locus range 623098-624507 bp]: array | spacers
           [Locus range 920844-921925 bp]: array | spacers
           [Locus range 1175181-1175539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMP01000003.1 Clostridioides difficile strain Gcol.A54 .cdiff_col_A54.3, whole genome shotgun sequence

⇒Summary: seq-len = 449707 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 371394-378677 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 371394-372041 bp Gene: pfam01881:cas6 Type: other Location: 372032-372796 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 372798-373946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 373967-375037 bp Gene: COG1203:cas3 Type: Type-I Location: 375048-377030 bp CRISPR array Location: 377597-378677 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 377597-378677 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 377597-378677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)