CRISPRone

CRISPRone report for GCA_007114725.1_ASM711472v1

♦ Seq 1: VIMV01000024.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.24, whole genome shotgun sequence

⇒Summary: seq-len = 14431 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8872-9232 bp Zoom in on locus 1 x6 CRISPR array Location: 8872-9232 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8872-9232 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8872-9232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMV01000010.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.10, whole genome shotgun sequence

⇒Summary: seq-len = 192049 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18147-18702 bp Zoom in on locus 1 x9 CRISPR array Location: 18147-18702 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18147-18702 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18147-18702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMV01000027.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.27, whole genome shotgun sequence

⇒Summary: seq-len = 10270 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2994-5437 bp Zoom in on locus 1 x10 x2 CRISPR array Location: 2994-3618 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2994-3618 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5342-5437 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 5342-5437 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2994-3618 bp]: array | spacers
           [Locus range 5342-5437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMV01000019.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.19, whole genome shotgun sequence

⇒Summary: seq-len = 24953 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19208-19566 bp Zoom in on locus 1 x6 CRISPR array Location: 19208-19566 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 19208-19566 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19208-19566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMV01000002.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.2, whole genome shotgun sequence

⇒Summary: seq-len = 407979 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148260-148354 bp 2 Locus 2: 362221-373419 bp Zoom in on locus 1 x2 Zoom in on locus 2 x26 CRISPR array Location: 148260-148354 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 148260-148354 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 362221-363135 bp Gene: pfam01881:cas6 Type: other Location: 363213-363950 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 363956-365806 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 365808-366722 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 366724-367425 bp Gene: cd09641:cas3HD Type: Type-I Location: 367436-369757 bp Gene: pfam01930:cas4 Type: Type-I Location: 369772-370323 bp Gene: cd09722:cas1 Type: universal Location: 370326-371306 bp Gene: cd09725:cas2 Type: universal Location: 371309-371575 bp CRISPR array Location: 371759-373419 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 371759-373419 bp Num of repeats: 26 Spacers: s2-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 148260-148354 bp]: array | spacers
           [Locus range 371759-373419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMV01000003.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.3, whole genome shotgun sequence

⇒Summary: seq-len = 376587 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125657-126413 bp Zoom in on locus 1 x12 CRISPR array Location: 125657-126413 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 125657-126413 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125657-126413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VIMV01000001.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.1, whole genome shotgun sequence

⇒Summary: seq-len = 652478 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12412-12836 bp 2 Locus 2: 361359-361844 bp 3 Locus 3: 525117-533438 bp 4 Locus 4: 606718-606811 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 12412-12836 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 12412-12836 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 361359-361844 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 361359-361844 bp Num of repeats: 8 Spacers: s7-s13 Gene: cd09641:cas3HD Type: Type-I Location: 525117-527525 bp Gene: cd09693:cas5 Type: Type-I Location: 527552-528349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 528365-529381 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 529401-530876 bp Gene: pfam01881:cas6 Type: other Location: 530881-531618 bp Gene: unk Type: unknown Location: 531719-531895 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 532329-533438 bp CRISPR array Location: 606718-606811 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 606718-606811 bp Num of repeats: 2 Spacers: s14-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12412-12836 bp]: array | spacers
           [Locus range 361359-361844 bp]: array | spacers
           [Locus range 606718-606811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VIMV01000012.1 Clostridioides difficile strain Gcol.A39 .cdiff_col_A39.12, whole genome shotgun sequence

⇒Summary: seq-len = 179639 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4065-4489 bp Zoom in on locus 1 x7 CRISPR array Location: 4065-4489 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4065-4489 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4065-4489 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)