CRISPRone

CRISPRone report for GCA_007114785.1_ASM711478v1

♦ Seq 1: VIMW01000008.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.8, whole genome shotgun sequence

⇒Summary: seq-len = 191495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172795-173349 bp Zoom in on locus 1 x9 CRISPR array Location: 172795-173349 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 172795-173349 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172795-173349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMW01000002.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.2, whole genome shotgun sequence

⇒Summary: seq-len = 458323 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125812-126568 bp Zoom in on locus 1 x12 CRISPR array Location: 125812-126568 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 125812-126568 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125812-126568 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMW01000017.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.17, whole genome shotgun sequence

⇒Summary: seq-len = 68130 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63658-64081 bp Zoom in on locus 1 x7 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63658-64081 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63658-64081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMW01000001.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.1, whole genome shotgun sequence

⇒Summary: seq-len = 652451 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12385-12809 bp 2 Locus 2: 361332-361817 bp 3 Locus 3: 525090-533411 bp 4 Locus 4: 606691-606784 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 12385-12809 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 12385-12809 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 361332-361817 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 361332-361817 bp Num of repeats: 8 Spacers: s7-s13 Gene: cd09641:cas3HD Type: Type-I Location: 525090-527498 bp Gene: cd09693:cas5 Type: Type-I Location: 527525-528322 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 528338-529354 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 529374-530849 bp Gene: pfam01881:cas6 Type: other Location: 530854-531591 bp Gene: unk Type: unknown Location: 531692-531868 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 532302-533411 bp CRISPR array Location: 606691-606784 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 606691-606784 bp Num of repeats: 2 Spacers: s14-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12385-12809 bp]: array | spacers
           [Locus range 361332-361817 bp]: array | spacers
           [Locus range 606691-606784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMW01000003.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.3, whole genome shotgun sequence

⇒Summary: seq-len = 409876 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41355-52552 bp 2 Locus 2: 266447-266540 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 CRISPR array Location: 41355-43014 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 41355-43014 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 43198-43464 bp Gene: cd09722:cas1 Type: universal Location: 43467-44447 bp Gene: pfam01930:cas4 Type: Type-I Location: 44450-44968 bp Gene: cd09641:cas3HD Type: Type-I Location: 45016-47337 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 47348-48049 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48051-48965 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 48967-50817 bp Gene: pfam01881:cas6 Type: other Location: 50823-51617 bp Gene: pfam13280:WYL Type: other Location: 51638-52552 bp CRISPR array Location: 266447-266540 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 266447-266540 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41355-43014 bp]: array | spacers
           [Locus range 266447-266540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMW01000022.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.22, whole genome shotgun sequence

⇒Summary: seq-len = 22399 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15118-17561 bp Zoom in on locus 1 x10 x2 CRISPR array Location: 15118-15742 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 15118-15742 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17466-17561 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 17466-17561 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15118-15742 bp]: array | spacers
           [Locus range 17466-17561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VIMW01000026.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.26, whole genome shotgun sequence

⇒Summary: seq-len = 8734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4078-4436 bp Zoom in on locus 1 x6 CRISPR array Location: 4078-4436 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4078-4436 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4078-4436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VIMW01000006.1 Clostridioides difficile strain Gcol.A38 .cdiff_col_A38.6, whole genome shotgun sequence

⇒Summary: seq-len = 227523 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141042-141403 bp Zoom in on locus 1 x6 CRISPR array Location: 141042-141403 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 141042-141403 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 141042-141403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)