CRISPRone

CRISPRone report for GCA_007114805.1_ASM711480v1

♦ Seq 1: VIMX01000015.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.15, whole genome shotgun sequence

⇒Summary: seq-len = 68130 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4050-4474 bp Zoom in on locus 1 x7 CRISPR array Location: 4050-4474 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4050-4474 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4050-4474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMX01000002.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.2, whole genome shotgun sequence

⇒Summary: seq-len = 403090 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143337-143431 bp 2 Locus 2: 357325-368523 bp Zoom in on locus 1 x2 Zoom in on locus 2 x26 CRISPR array Location: 143337-143431 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 143337-143431 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 357325-358239 bp Gene: pfam01881:cas6 Type: other Location: 358317-359054 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 359060-360910 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 360912-361826 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 361828-362529 bp Gene: cd09641:cas3HD Type: Type-I Location: 362540-364861 bp Gene: pfam01930:cas4 Type: Type-I Location: 364876-365427 bp Gene: cd09722:cas1 Type: universal Location: 365430-366410 bp Gene: cd09725:cas2 Type: universal Location: 366413-366679 bp CRISPR array Location: 366863-368523 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 366863-368523 bp Num of repeats: 26 Spacers: s2-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 143337-143431 bp]: array | spacers
           [Locus range 366863-368523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMX01000022.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.22, whole genome shotgun sequence

⇒Summary: seq-len = 10274 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4838-7280 bp Zoom in on locus 1 x2 x10 CRISPR array Location: 4838-4932 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4838-4932 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6657-7280 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 6657-7280 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4838-4932 bp]: array | spacers
           [Locus range 6657-7280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMX01000001.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.1, whole genome shotgun sequence

⇒Summary: seq-len = 877083 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12385-12809 bp 2 Locus 2: 361332-361817 bp 3 Locus 3: 525090-533411 bp 4 Locus 4: 606691-606784 bp 5 Locus 5: 738596-738956 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 Zoom in on locus 5 x6 CRISPR array Location: 12385-12809 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 12385-12809 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 361332-361817 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 361332-361817 bp Num of repeats: 8 Spacers: s7-s13 Gene: cd09641:cas3HD Type: Type-I Location: 525090-527498 bp Gene: cd09693:cas5 Type: Type-I Location: 527525-528322 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 528338-529354 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 529374-530849 bp Gene: pfam01881:cas6 Type: other Location: 530854-531591 bp Gene: unk Type: unknown Location: 531692-531868 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 532302-533411 bp CRISPR array Location: 606691-606784 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 606691-606784 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 738596-738956 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 738596-738956 bp Num of repeats: 6 Spacers: s15-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12385-12809 bp]: array | spacers
           [Locus range 361332-361817 bp]: array | spacers
           [Locus range 606691-606784 bp]: array | spacers
           [Locus range 738596-738956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMX01000009.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.9, whole genome shotgun sequence

⇒Summary: seq-len = 192586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18199-18754 bp Zoom in on locus 1 x9 CRISPR array Location: 18199-18754 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18199-18754 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18199-18754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VIMX01000003.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.3, whole genome shotgun sequence

⇒Summary: seq-len = 396977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251670-252425 bp Zoom in on locus 1 x12 CRISPR array Location: 251670-252425 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 251670-252425 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 251670-252425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VIMX01000021.1 Clostridioides difficile strain Gcol.A37 .cdiff_col_A37.21, whole genome shotgun sequence

⇒Summary: seq-len = 11508 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7065-7422 bp Zoom in on locus 1 x6 CRISPR array Location: 7065-7422 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 7065-7422 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7065-7422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)