CRISPRone

CRISPRone report for GCA_007114815.1_ASM711481v1

♦ Seq 1: VIMZ01000001.1 Clostridioides difficile strain Gcol.A34 .cdiff_col_A34.1, whole genome shotgun sequence

⇒Summary: seq-len = 1155784 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47421-48112 bp 2 Locus 2: 123261-131126 bp 3 Locus 3: 287108-287927 bp 4 Locus 4: 651820-651915 bp 5 Locus 5: 960123-961797 bp 6 Locus 6: 1020304-1023521 bp 7 Locus 7: 1041255-1042282 bp Zoom in on locus 1 x11 Zoom in on locus 2 Zoom in on locus 3 x13 Zoom in on locus 4 x2 Zoom in on locus 5 x26 Zoom in on locus 6 Zoom in on locus 7 x16 CRISPR array Location: 47421-48112 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 47421-48112 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 123261-124370 bp Gene: pfam01881:cas6 Type: other Location: 124628-125365 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 125370-126845 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 126865-127878 bp Gene: cd09693:cas5 Type: Type-I Location: 127894-128691 bp Gene: cd09641:cas3HD Type: Type-I Location: 128718-131126 bp CRISPR array Location: 287108-287927 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 287108-287927 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 651820-651915 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 651820-651915 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 960123-961797 bp Num of repeats: 26 Spacers: s24-s48 CRISPR array Location: 960123-961797 bp Num of repeats: 26 Spacers: s24-s48 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1020304-1020672 bp Gene: unk Type: unknown Location: 1020848-1022371 bp Gene: cas14:cas14 Type: Type-V Location: 1022766-1023521 bp CRISPR array Location: 1041255-1042282 bp Num of repeats: 16 Spacers: s49-s63 CRISPR array Location: 1041255-1042282 bp Num of repeats: 16 Spacers: s49-s63 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47421-48112 bp]: array | spacers
           [Locus range 287108-287927 bp]: array | spacers
           [Locus range 651820-651915 bp]: array | spacers
           [Locus range 960123-961797 bp]: array | spacers
           [Locus range 1041255-1042282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIMZ01000004.1 Clostridioides difficile strain Gcol.A34 .cdiff_col_A34.4, whole genome shotgun sequence

⇒Summary: seq-len = 391954 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328536-328630 bp Zoom in on locus 1 x2 CRISPR array Location: 328536-328630 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 328536-328630 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 328536-328630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIMZ01000005.1 Clostridioides difficile strain Gcol.A34 .cdiff_col_A34.5, whole genome shotgun sequence

⇒Summary: seq-len = 277664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86141-87222 bp Zoom in on locus 1 x17 CRISPR array Location: 86141-87222 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 86141-87222 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86141-87222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIMZ01000002.1 Clostridioides difficile strain Gcol.A34 .cdiff_col_A34.2, whole genome shotgun sequence

⇒Summary: seq-len = 415274 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42170-54365 bp 2 Locus 2: 293140-294294 bp Zoom in on locus 1 x41 Zoom in on locus 2 x18 CRISPR array Location: 42170-44827 bp Num of repeats: 41 Spacers: s1-s40 CRISPR array Location: 42170-44827 bp Num of repeats: 41 Spacers: s1-s40 Gene: cd09725:cas2 Type: universal Location: 45011-45277 bp Gene: cd09722:cas1 Type: universal Location: 45280-46260 bp Gene: pfam01930:cas4 Type: Type-I Location: 46263-46781 bp Gene: COG1203:cas3 Type: Type-I Location: 46829-49150 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 49161-49862 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49864-50778 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 50780-52630 bp Gene: pfam01881:cas6 Type: other Location: 52636-53430 bp Gene: pfam13280:WYL Type: other Location: 53451-54365 bp CRISPR array Location: 293140-294294 bp Num of repeats: 18 Spacers: s41-s57 CRISPR array Location: 293140-294294 bp Num of repeats: 18 Spacers: s41-s57 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42170-44827 bp]: array | spacers
           [Locus range 293140-294294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIMZ01000006.1 Clostridioides difficile strain Gcol.A34 .cdiff_col_A34.6, whole genome shotgun sequence

⇒Summary: seq-len = 258474 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13724-16167 bp Zoom in on locus 1 x10 x2 CRISPR array Location: 13724-14348 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 13724-14348 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 16072-16167 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 16072-16167 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13724-14348 bp]: array | spacers
           [Locus range 16072-16167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)