CRISPRone

CRISPRone report for GCA_007114825.1_ASM711482v1

♦ Seq 1: VINA01000007.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.7, whole genome shotgun sequence

⇒Summary: seq-len = 190173 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147002-159198 bp Zoom in on locus 1 x41 Gene: pfam13280:WYL Type: other Location: 147002-147916 bp Gene: pfam01881:cas6 Type: other Location: 147994-148731 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148737-150587 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 150589-151503 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 151505-152206 bp Gene: COG1203:cas3 Type: Type-I Location: 152217-154538 bp Gene: pfam01930:cas4 Type: Type-I Location: 154553-155104 bp Gene: cd09722:cas1 Type: universal Location: 155107-156087 bp Gene: cd09725:cas2 Type: universal Location: 156090-156356 bp CRISPR array Location: 156540-159198 bp Num of repeats: 41 Spacers: s1-s40 CRISPR array Location: 156540-159198 bp Num of repeats: 41 Spacers: s1-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 156540-159198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VINA01000003.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.3, whole genome shotgun sequence

⇒Summary: seq-len = 391812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63184-63277 bp Zoom in on locus 1 x2 CRISPR array Location: 63184-63277 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 63184-63277 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63184-63277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VINA01000005.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.5, whole genome shotgun sequence

⇒Summary: seq-len = 258477 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242313-244755 bp Zoom in on locus 1 x2 x10 CRISPR array Location: 242313-242407 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 242313-242407 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 244132-244755 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 244132-244755 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 242313-242407 bp]: array | spacers
           [Locus range 244132-244755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VINA01000004.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.4, whole genome shotgun sequence

⇒Summary: seq-len = 277664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190443-191525 bp Zoom in on locus 1 x17 CRISPR array Location: 190443-191525 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 190443-191525 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190443-191525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VINA01000001.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.1, whole genome shotgun sequence

⇒Summary: seq-len = 1157449 bp; # of CRISPR array = 5; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47406-48097 bp 2 Locus 2: 123246-131111 bp 3 Locus 3: 287093-287912 bp 4 Locus 4: 651805-651900 bp 5 Locus 5: 960108-961782 bp 6 Locus 6: 1020289-1023633 bp 7 Locus 7: 1041367-1042394 bp Zoom in on locus 1 x11 Zoom in on locus 2 Zoom in on locus 3 x13 Zoom in on locus 4 x2 Zoom in on locus 5 x26 Zoom in on locus 6 Zoom in on locus 7 x16 CRISPR array Location: 47406-48097 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 47406-48097 bp Num of repeats: 11 Spacers: s1-s10 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 123246-124355 bp Gene: pfam01881:cas6 Type: other Location: 124613-125350 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 125355-126830 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 126850-127863 bp Gene: cd09693:cas5 Type: Type-I Location: 127879-128676 bp Gene: cd09641:cas3HD Type: Type-I Location: 128703-131111 bp CRISPR array Location: 287093-287912 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 287093-287912 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 651805-651900 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 651805-651900 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 960108-961782 bp Num of repeats: 26 Spacers: s24-s48 CRISPR array Location: 960108-961782 bp Num of repeats: 26 Spacers: s24-s48 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1020289-1020657 bp Gene: unk Type: unknown Location: 1020833-1022356 bp Gene: cas14:cas14 Type: Type-V Location: 1022917-1023633 bp CRISPR array Location: 1041367-1042394 bp Num of repeats: 16 Spacers: s49-s63 CRISPR array Location: 1041367-1042394 bp Num of repeats: 16 Spacers: s49-s63 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47406-48097 bp]: array | spacers
           [Locus range 287093-287912 bp]: array | spacers
           [Locus range 651805-651900 bp]: array | spacers
           [Locus range 960108-961782 bp]: array | spacers
           [Locus range 1041367-1042394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VINA01000008.1 Clostridioides difficile strain Gcol.A33 .cdiff_col_A33.8, whole genome shotgun sequence

⇒Summary: seq-len = 167778 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74845-76000 bp Zoom in on locus 1 x18 CRISPR array Location: 74845-76000 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 74845-76000 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74845-76000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)