CRISPRone

CRISPRone report for GCA_007114905.1_ASM711490v1

♦ Seq 1: VINC01000001.1 Clostridioides difficile strain Gcol.A31 .cdiff_col_A31.1, whole genome shotgun sequence

⇒Summary: seq-len = 630322 bp; # of CRISPR array = 4; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23304-23595 bp 2 Locus 2: 116698-117452 bp 3 Locus 3: 148402-152171 bp 4 Locus 4: 230107-230793 bp 5 Locus 5: 439046-440002 bp Zoom in on locus 1 x5 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x11 Zoom in on locus 5 x15 CRISPR array Location: 23304-23595 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23304-23595 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 116698-117452 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 116698-117452 bp Num of repeats: 12 Spacers: s5-s15 Gene: cas14:cas14 Type: Type-V Location: 148402-149274 bp Gene: COG2378:WYL Type: other Location: 149913-150824 bp Gene: unk Type: unknown Location: 150935-151402 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 151572-152171 bp CRISPR array Location: 230107-230793 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 230107-230793 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 439046-440002 bp Num of repeats: 15 Spacers: s26-s39 CRISPR array Location: 439046-440002 bp Num of repeats: 15 Spacers: s26-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23304-23595 bp]: array | spacers
           [Locus range 116698-117452 bp]: array | spacers
           [Locus range 230107-230793 bp]: array | spacers
           [Locus range 439046-440002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VINC01000003.1 Clostridioides difficile strain Gcol.A31 .cdiff_col_A31.3, whole genome shotgun sequence

⇒Summary: seq-len = 520194 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192672-203666 bp 2 Locus 2: 312025-312384 bp 3 Locus 3: 355935-356162 bp Zoom in on locus 1 x30 Zoom in on locus 2 x6 Zoom in on locus 3 x4 Gene: cd09652:cas6 Type: other Location: 192672-193367 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 193379-195118 bp Gene: pfam05107:cas7b Type: Type-I Location: 195111-196100 bp Gene: cd09693:cas5 Type: Type-I Location: 196102-196842 bp Gene: cd09641:cas3HD Type: Type-I Location: 196866-199424 bp CRISPR array Location: 199614-201554 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 199614-201554 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam01930:cas4 Type: Type-I Location: 201638-202132 bp Gene: cd09722:cas1 Type: universal Location: 202158-203165 bp Gene: cd09725:cas2 Type: universal Location: 203376-203666 bp CRISPR array Location: 312025-312384 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 312025-312384 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 355935-356162 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 355935-356162 bp Num of repeats: 4 Spacers: s35-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 199614-201554 bp]: array | spacers
           [Locus range 312025-312384 bp]: array | spacers
           [Locus range 355935-356162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VINC01000011.1 Clostridioides difficile strain Gcol.A31 .cdiff_col_A31.11, whole genome shotgun sequence

⇒Summary: seq-len = 134458 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108431-119343 bp Zoom in on locus 1 x21 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 109962-110228 bp Gene: cd09722:cas1 Type: universal Location: 110231-111211 bp Gene: pfam01930:cas4 Type: Type-I Location: 111214-111732 bp Gene: COG1203:cas3 Type: Type-I Location: 111780-114101 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 114112-114813 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 114815-115729 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 115731-117608 bp Gene: pfam01881:cas6 Type: other Location: 117614-118408 bp Gene: pfam13280:WYL Type: other Location: 118429-119343 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108431-109778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VINC01000006.1 Clostridioides difficile strain Gcol.A31 .cdiff_col_A31.6, whole genome shotgun sequence

⇒Summary: seq-len = 208938 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66079-73948 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 66079-67188 bp Gene: pfam01881:cas6 Type: other Location: 67447-68184 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 68189-69655 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 69675-70691 bp Gene: cd09693:cas5 Type: Type-I Location: 70707-71513 bp Gene: cd09641:cas3HD Type: Type-I Location: 71540-73948 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VINC01000008.1 Clostridioides difficile strain Gcol.A31 .cdiff_col_A31.8, whole genome shotgun sequence

⇒Summary: seq-len = 181310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148418-149108 bp Zoom in on locus 1 x11 CRISPR array Location: 148418-149108 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 148418-149108 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148418-149108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)